miRNA display CGI


Results 81 - 100 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 36881 0.7 0.514115
Target:  5'- cGC-CCGCGCCgACGAcGccggUGAgCGCCc -3'
miRNA:   3'- -CGuGGCGCGGgUGCUaCa---ACUgGUGG- -5'
23230 5' -55.7 NC_005259.1 + 36784 0.67 0.734512
Target:  5'- cCGCCGUccugaccGCUCGCGucggcauUGUUGACCGgCg -3'
miRNA:   3'- cGUGGCG-------CGGGUGCu------ACAACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 36730 0.71 0.483887
Target:  5'- cCGCCGCGCCCGCcggGAUacgUGAUC-CCg -3'
miRNA:   3'- cGUGGCGCGGGUG---CUAca-ACUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 36630 0.75 0.28656
Target:  5'- cGCGCCGCccgcaagGCCCGCGAUcagcgaGCCGCCg -3'
miRNA:   3'- -CGUGGCG-------CGGGUGCUAcaac--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 36138 0.66 0.789113
Target:  5'- cCGCCGgGCuguccgucgccauggCCACGGUGacGACCuuGCCg -3'
miRNA:   3'- cGUGGCgCG---------------GGUGCUACaaCUGG--UGG- -5'
23230 5' -55.7 NC_005259.1 + 35836 0.71 0.483887
Target:  5'- -aGCCGCcaccGCCCGCGAgcacagGUccGCCGCCg -3'
miRNA:   3'- cgUGGCG----CGGGUGCUa-----CAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 35796 0.7 0.565009
Target:  5'- aCGCCGCGCCUcaacaggACGGUGccguacGACC-CCg -3'
miRNA:   3'- cGUGGCGCGGG-------UGCUACaa----CUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 35692 0.69 0.608568
Target:  5'- aCGCCGUGCCCGgCGAgggGUcgcUGAcgagguauCCGCCc -3'
miRNA:   3'- cGUGGCGCGGGU-GCUa--CA---ACU--------GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 35474 0.69 0.607499
Target:  5'- aGCACCGCccgguagGCCgaACGAUccuggGUUGGCC-CCg -3'
miRNA:   3'- -CGUGGCG-------CGGg-UGCUA-----CAACUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 35199 0.76 0.247517
Target:  5'- aGCACCGUGCCgCcugaggcgGCGAggaacgUGACCGCCa -3'
miRNA:   3'- -CGUGGCGCGG-G--------UGCUaca---ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 34621 0.66 0.775591
Target:  5'- cGCGauGUGCCagACGAUGggcgcgGACCACa -3'
miRNA:   3'- -CGUggCGCGGg-UGCUACaa----CUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 34515 0.67 0.725251
Target:  5'- uCGCCGacauuGCgCACGAc--UGACCACCg -3'
miRNA:   3'- cGUGGCg----CGgGUGCUacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 32187 0.66 0.755803
Target:  5'- cGCugCGCGCCUcggucuGCGAc-UUGGCCucagacACCg -3'
miRNA:   3'- -CGugGCGCGGG------UGCUacAACUGG------UGG- -5'
23230 5' -55.7 NC_005259.1 + 31825 0.75 0.311933
Target:  5'- cCACCGCGCCCGCGucgaucuucucgcGcgUGACCGCg -3'
miRNA:   3'- cGUGGCGCGGGUGCua-----------Ca-ACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 31765 0.7 0.566064
Target:  5'- cCACCGC-CCCGucauCGAUGUgcugcgccuUGACCGCg -3'
miRNA:   3'- cGUGGCGcGGGU----GCUACA---------ACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 31639 0.7 0.524364
Target:  5'- uGUACUGCG-CCACGGucaUGUaGACCugCu -3'
miRNA:   3'- -CGUGGCGCgGGUGCU---ACAaCUGGugG- -5'
23230 5' -55.7 NC_005259.1 + 31569 0.68 0.672714
Target:  5'- uGCACCGCGCCU--GAUcGUc-GCCAUCa -3'
miRNA:   3'- -CGUGGCGCGGGugCUA-CAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 31406 0.67 0.725251
Target:  5'- aGCACaGCGCCC-CGAgGUc-GCCGCUg -3'
miRNA:   3'- -CGUGgCGCGGGuGCUaCAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 30665 0.72 0.435517
Target:  5'- aGCACauCGCCCgGCGA-GUagcUGGCCACCu -3'
miRNA:   3'- -CGUGgcGCGGG-UGCUaCA---ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 30524 0.67 0.693909
Target:  5'- aGCucuuuaGCGCCCugcAUGAUcaUGGCCACCg -3'
miRNA:   3'- -CGugg---CGCGGG---UGCUAcaACUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.