miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 14328 0.81 0.115087
Target:  5'- aCGCCGcCGCCCGCG-UGcgGGCCGCCg -3'
miRNA:   3'- cGUGGC-GCGGGUGCuACaaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 45516 0.83 0.092323
Target:  5'- cCACCGCGCC---GGUGUUGGCCGCCg -3'
miRNA:   3'- cGUGGCGCGGgugCUACAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 37385 0.84 0.082608
Target:  5'- gGCACCGCccgccgcgccGCCCAUGGUGUUGuugacGCCGCCc -3'
miRNA:   3'- -CGUGGCG----------CGGGUGCUACAAC-----UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 46884 0.84 0.071832
Target:  5'- cGCGCCGcCGCCCGCGAUGagcGcCCGCCg -3'
miRNA:   3'- -CGUGGC-GCGGGUGCUACaa-CuGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 41405 0.91 0.024292
Target:  5'- cGCGCCGCucgggguGCCCACGAUGUgcacgGGCCGCCa -3'
miRNA:   3'- -CGUGGCG-------CGGGUGCUACAa----CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 62822 0.76 0.251277
Target:  5'- aGCGCCGCuuGCCCGCGAggucgagcgcgcgGUUGACgagcaGCCg -3'
miRNA:   3'- -CGUGGCG--CGGGUGCUa------------CAACUGg----UGG- -5'
23230 5' -55.7 NC_005259.1 + 48072 0.76 0.253811
Target:  5'- cCGCCGCGCCCugagcgAUGGUGUUGAgC-CCg -3'
miRNA:   3'- cGUGGCGCGGG------UGCUACAACUgGuGG- -5'
23230 5' -55.7 NC_005259.1 + 52215 0.74 0.324088
Target:  5'- gGCACCGCGuUCCGCGcccGcUGAUCACCc -3'
miRNA:   3'- -CGUGGCGC-GGGUGCua-CaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 9397 0.74 0.31645
Target:  5'- cGCACgCGCGCCC-CGGUacggGugCGCCa -3'
miRNA:   3'- -CGUG-GCGCGGGuGCUAcaa-CugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 31825 0.75 0.311933
Target:  5'- cCACCGCGCCCGCGucgaucuucucgcGcgUGACCGCg -3'
miRNA:   3'- cGUGGCGCGGGUGCua-----------Ca-ACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 43287 0.75 0.308949
Target:  5'- aGCGCCcgccgccgacGCGCCCGCcuGAauggcugcGUUGGCCACCg -3'
miRNA:   3'- -CGUGG----------CGCGGGUG--CUa-------CAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 43933 0.75 0.305987
Target:  5'- aCACCGCGCUacugacagcgucgGCGAUGggcggGGCCGCCg -3'
miRNA:   3'- cGUGGCGCGGg------------UGCUACaa---CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 22176 0.75 0.304514
Target:  5'- aCAgCGCGCCCAucgUGGUugcgaccuugcagacGUUGGCCACCg -3'
miRNA:   3'- cGUgGCGCGGGU---GCUA---------------CAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 64636 0.75 0.301584
Target:  5'- aGCGCCcaccaaucgaGCGUCCACGAguauUUGAUCACCc -3'
miRNA:   3'- -CGUGG----------CGCGGGUGCUac--AACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 64755 0.75 0.294355
Target:  5'- cCACCGCGCCuCGCGAcg--GugCGCCu -3'
miRNA:   3'- cGUGGCGCGG-GUGCUacaaCugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 22457 0.75 0.294355
Target:  5'- gGCuACCucguGCGCCCGCGcgGUcUGACCGuCCg -3'
miRNA:   3'- -CG-UGG----CGCGGGUGCuaCA-ACUGGU-GG- -5'
23230 5' -55.7 NC_005259.1 + 36630 0.75 0.28656
Target:  5'- cGCGCCGCccgcaagGCCCGCGAUcagcgaGCCGCCg -3'
miRNA:   3'- -CGUGGCG-------CGGGUGCUAcaac--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 14282 0.76 0.266792
Target:  5'- aCACCGCcuGCCCAaccacCGAUGUcggugcguaUGGCCGCCc -3'
miRNA:   3'- cGUGGCG--CGGGU-----GCUACA---------ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 46946 0.76 0.260235
Target:  5'- cGCGCCGCcgaCCGCGuugagcuUGUUGGCCACg -3'
miRNA:   3'- -CGUGGCGcg-GGUGCu------ACAACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 60487 0.76 0.260235
Target:  5'- cGCACCaGCGCCCAgcacgcgcCGGUGUUgucguaGugCGCCa -3'
miRNA:   3'- -CGUGG-CGCGGGU--------GCUACAA------CugGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.