miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23231 3' -49.8 NC_005259.1 + 44805 0.66 0.972821
Target:  5'- cCGGUGGCCUggcccUUGGuca----GCAGCu -3'
miRNA:   3'- -GCUACCGGAa----AACCuuuagcgCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 11311 0.66 0.972821
Target:  5'- uGA-GGCCgagacGGg---CGCGCAGCu -3'
miRNA:   3'- gCUaCCGGaaaa-CCuuuaGCGCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 26637 0.66 0.966316
Target:  5'- uCGAUGGCC---UGGcgugCGCuCGGCa -3'
miRNA:   3'- -GCUACCGGaaaACCuuuaGCGcGUCG- -5'
23231 3' -49.8 NC_005259.1 + 40526 0.66 0.963057
Target:  5'- aCGAUGGUCUguagguucuugccgUGGuAGUCGaCGCGcGCc -3'
miRNA:   3'- -GCUACCGGAaa------------ACCuUUAGC-GCGU-CG- -5'
23231 3' -49.8 NC_005259.1 + 45170 0.67 0.954615
Target:  5'- --uUGGCCUUgUUGcgcgccGAGGUCaGCGCGGUg -3'
miRNA:   3'- gcuACCGGAA-AAC------CUUUAG-CGCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 45495 0.67 0.945442
Target:  5'- uGGUGGCCUUggucgcugUGGccacCGCGcCGGUg -3'
miRNA:   3'- gCUACCGGAAa-------ACCuuuaGCGC-GUCG- -5'
23231 3' -49.8 NC_005259.1 + 50280 0.68 0.923661
Target:  5'- uCGGUGGCg----GGAAcGUCGUGCAcGCu -3'
miRNA:   3'- -GCUACCGgaaaaCCUU-UAGCGCGU-CG- -5'
23231 3' -49.8 NC_005259.1 + 68682 0.68 0.916221
Target:  5'- gGAUGGCCUUcucgaugaucGAGG-CGgGCAGCg -3'
miRNA:   3'- gCUACCGGAAaac-------CUUUaGCgCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 26948 0.68 0.91103
Target:  5'- ----cGCCgcugcUGGAAcgUGCGCAGCg -3'
miRNA:   3'- gcuacCGGaaa--ACCUUuaGCGCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 32650 0.68 0.91103
Target:  5'- --uUGGCCggggUggGGAAAUCGU-CGGCa -3'
miRNA:   3'- gcuACCGGa---AaaCCUUUAGCGcGUCG- -5'
23231 3' -49.8 NC_005259.1 + 58955 0.68 0.904282
Target:  5'- ---cGGCCU--UGGccagcAGGUCGgGCAGCu -3'
miRNA:   3'- gcuaCCGGAaaACC-----UUUAGCgCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 47671 0.69 0.900096
Target:  5'- uGAUGGCCUuggccaccuuuugcaUgcccggUUGGA---UGCGCGGCa -3'
miRNA:   3'- gCUACCGGA---------------A------AACCUuuaGCGCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 1888 0.69 0.889936
Target:  5'- ---aGGCCgcc--GAGAUCGCGCgAGCu -3'
miRNA:   3'- gcuaCCGGaaaacCUUUAGCGCG-UCG- -5'
23231 3' -49.8 NC_005259.1 + 3076 0.69 0.866365
Target:  5'- cCGA-GGCCgacaaGAGAgcCGCGCAGCg -3'
miRNA:   3'- -GCUaCCGGaaaacCUUUa-GCGCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 14078 0.71 0.802821
Target:  5'- gCGGUGGCCU------AcgUGCGCAGCg -3'
miRNA:   3'- -GCUACCGGAaaaccuUuaGCGCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 68094 0.73 0.712658
Target:  5'- uCGAUGGCCg---GGGuaacgacguaguucgGGUCGagaGCAGCg -3'
miRNA:   3'- -GCUACCGGaaaaCCU---------------UUAGCg--CGUCG- -5'
23231 3' -49.8 NC_005259.1 + 7871 0.73 0.663647
Target:  5'- cCGGUGGCCcgagugcUUGGAc-UCGgGCAGCc -3'
miRNA:   3'- -GCUACCGGaa-----AACCUuuAGCgCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 12015 0.74 0.607268
Target:  5'- uCGGUGGCCUUguacGGug--CGgGCGGCa -3'
miRNA:   3'- -GCUACCGGAAaa--CCuuuaGCgCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 62757 0.75 0.584802
Target:  5'- gCGGUGGUaCUcgUGGGccggaacGUCGCGCAGCu -3'
miRNA:   3'- -GCUACCG-GAaaACCUu------UAGCGCGUCG- -5'
23231 3' -49.8 NC_005259.1 + 58448 0.75 0.584802
Target:  5'- uCGGUGGCCU--UGGuGAUCGCGgccacCAGUg -3'
miRNA:   3'- -GCUACCGGAaaACCuUUAGCGC-----GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.