miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 3' -56.1 NC_005259.1 + 47794 0.71 0.458202
Target:  5'- gCAGCgGuCCGAcGGUGAgUCGCGagACCu -3'
miRNA:   3'- aGUCGgU-GGCU-CCACU-AGCGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 47609 0.69 0.591092
Target:  5'- gUCGGCgagGCUGAGGUucUUGuCGUCGCCg -3'
miRNA:   3'- -AGUCGg--UGGCUCCAcuAGC-GCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 47468 1.13 0.000662
Target:  5'- gUCAGCCACCGAGGUGAUCGCGUCACCg -3'
miRNA:   3'- -AGUCGGUGGCUCCACUAGCGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 47337 0.68 0.612404
Target:  5'- gUCAGCC-CCgugaucguuuuGAGGauguugagGAUCGUGUUGCCg -3'
miRNA:   3'- -AGUCGGuGG-----------CUCCa-------CUAGCGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 47275 0.73 0.359273
Target:  5'- cCAGCgCACCGAGcaGAcCGCcGUCGCCg -3'
miRNA:   3'- aGUCG-GUGGCUCcaCUaGCG-CAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 46589 0.67 0.718463
Target:  5'- --cGCCGcCCGAGGcGAgcagCGCGUCGu- -3'
miRNA:   3'- aguCGGU-GGCUCCaCUa---GCGCAGUgg -5'
23232 3' -56.1 NC_005259.1 + 46321 0.78 0.183792
Target:  5'- gCGGCC-CCGAGG--GUCGCGUCGCg -3'
miRNA:   3'- aGUCGGuGGCUCCacUAGCGCAGUGg -5'
23232 3' -56.1 NC_005259.1 + 45734 0.66 0.749169
Target:  5'- gCA-CCACCGAGGc---CGCG-CACCg -3'
miRNA:   3'- aGUcGGUGGCUCCacuaGCGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 45529 0.68 0.63378
Target:  5'- gUUGGCCGCCGuGGcugcgagcgGGUUGC-UCGCCg -3'
miRNA:   3'- -AGUCGGUGGCuCCa--------CUAGCGcAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 45488 0.69 0.580481
Target:  5'- -uGGCCGCUGGuGGccuUGGUCGCuGUgGCCa -3'
miRNA:   3'- agUCGGUGGCU-CC---ACUAGCG-CAgUGG- -5'
23232 3' -56.1 NC_005259.1 + 40886 0.73 0.376119
Target:  5'- cCGGCCACCGuGGcggGGUCggcaGCGUC-CCa -3'
miRNA:   3'- aGUCGGUGGCuCCa--CUAG----CGCAGuGG- -5'
23232 3' -56.1 NC_005259.1 + 39773 0.7 0.50773
Target:  5'- gCAGCCugCugcuGGUGAUCG-GUgCGCCg -3'
miRNA:   3'- aGUCGGugGcu--CCACUAGCgCA-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 39089 0.68 0.63378
Target:  5'- aCAGUCcguugagcggGuuGAGGUGcugcaAUCGCGUCACg -3'
miRNA:   3'- aGUCGG----------UggCUCCAC-----UAGCGCAGUGg -5'
23232 3' -56.1 NC_005259.1 + 36945 0.73 0.335007
Target:  5'- gCuGUCACCGGGGUGccCGCGagACCg -3'
miRNA:   3'- aGuCGGUGGCUCCACuaGCGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 36437 0.72 0.420503
Target:  5'- gCAGCguCGCCGAGGUcGAcCGCGUCGa- -3'
miRNA:   3'- aGUCG--GUGGCUCCA-CUaGCGCAGUgg -5'
23232 3' -56.1 NC_005259.1 + 36135 0.71 0.439122
Target:  5'- -gGGCCGCCGGGcUG-UC-CGUCGCCa -3'
miRNA:   3'- agUCGGUGGCUCcACuAGcGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 36021 0.69 0.559387
Target:  5'- -uGGCCAgCGAGGUcgacauGAUCaGCGagGCCa -3'
miRNA:   3'- agUCGGUgGCUCCA------CUAG-CGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 34732 0.69 0.580481
Target:  5'- gUCGGggaaACCGuuGGUGAUCGUG-CGCCa -3'
miRNA:   3'- -AGUCgg--UGGCu-CCACUAGCGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 33594 0.69 0.559387
Target:  5'- -gGGCCACCGAGGcgcGGUCGag-CugCa -3'
miRNA:   3'- agUCGGUGGCUCCa--CUAGCgcaGugG- -5'
23232 3' -56.1 NC_005259.1 + 33131 0.67 0.687031
Target:  5'- gCAGCCGCCGcGcGUGAUCuugcCGUagACCg -3'
miRNA:   3'- aGUCGGUGGCuC-CACUAGc---GCAg-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.