miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 5371 0.68 0.374195
Target:  5'- uCGCGCCGGGCaAGugcccacacaucaccACCGUCGUcaucacccgCGCUGGc -3'
miRNA:   3'- -GCGUGGCUCG-UC---------------UGGCGGCA---------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 23674 0.68 0.374195
Target:  5'- cCGCcgaccCCGAGCAGGCgcacgcagacuaccgCGUCGUgaucgCGCCGGa -3'
miRNA:   3'- -GCGu----GGCUCGUCUG---------------GCGGCA-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 42542 0.68 0.379115
Target:  5'- gGCACCGAGguGGCgggcaGCuCGgcgagcaGCCGGu -3'
miRNA:   3'- gCGUGGCUCguCUGg----CG-GCag-----CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 19868 0.68 0.379115
Target:  5'- uCGCGCCc-GCcgGGAUCGCCGaCGCCGc -3'
miRNA:   3'- -GCGUGGcuCG--UCUGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 775 0.68 0.387411
Target:  5'- cCGCGCCGAgGCGG-CUGCCcUCgGuuGGg -3'
miRNA:   3'- -GCGUGGCU-CGUCuGGCGGcAG-CggCC- -5'
23233 5' -61.6 NC_005259.1 + 56068 0.68 0.395827
Target:  5'- gGCGucgagaccgUCGAGCAGAUCGgUGcUCGUCGGg -3'
miRNA:   3'- gCGU---------GGCUCGUCUGGCgGC-AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 58169 0.68 0.4035
Target:  5'- gCGCACgggaucuCGAcGCAcgucuuGACCGCCGUgggcuUGCCGGu -3'
miRNA:   3'- -GCGUG-------GCU-CGU------CUGGCGGCA-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 48523 0.68 0.4035
Target:  5'- cCGCACU--GCcGACuucucggCGCUGUCGCCGGu -3'
miRNA:   3'- -GCGUGGcuCGuCUG-------GCGGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 41877 0.68 0.404359
Target:  5'- aGCACCGuGGCGGGCCGauaCGcaUGCgGGa -3'
miRNA:   3'- gCGUGGC-UCGUCUGGCg--GCa-GCGgCC- -5'
23233 5' -61.6 NC_005259.1 + 43226 0.68 0.39329
Target:  5'- -cCGCCGAGCuGAUgagcgagcugacgaUGCCGcccgCGCCGGg -3'
miRNA:   3'- gcGUGGCUCGuCUG--------------GCGGCa---GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 52110 0.68 0.404359
Target:  5'- gGCAacCUGAGCGGcaaucuccgcACCGCCGuccggcaccUCGCCGa -3'
miRNA:   3'- gCGU--GGCUCGUC----------UGGCGGC---------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 39326 0.68 0.39329
Target:  5'- uCGCGCCGcuGguGACCGUcaacucgaccacgaCGU-GCCGGg -3'
miRNA:   3'- -GCGUGGCu-CguCUGGCG--------------GCAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 17314 0.68 0.370938
Target:  5'- -aCGCCGAGCGGuACC-CCGagggugUGCCGGu -3'
miRNA:   3'- gcGUGGCUCGUC-UGGcGGCa-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 45001 0.69 0.324453
Target:  5'- gGCACC--GCcGACCGCCGgggccgCGCCGc -3'
miRNA:   3'- gCGUGGcuCGuCUGGCGGCa-----GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 22522 0.69 0.327413
Target:  5'- gCGCACCGucgccggugauuuccAGCAGuCCGaCC-UCGCCGa -3'
miRNA:   3'- -GCGUGGC---------------UCGUCuGGC-GGcAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 63153 0.69 0.324453
Target:  5'- uCGCccacGuuGAGCAG-CCGCCGcagCGCCGc -3'
miRNA:   3'- -GCG----UggCUCGUCuGGCGGCa--GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 6201 0.69 0.331891
Target:  5'- aGCAgCguGAGCGGggugaGCCGCCG-CGCCGa -3'
miRNA:   3'- gCGUgG--CUCGUC-----UGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 5492 0.69 0.331891
Target:  5'- aGCGCCGAGCgaGGAUCGagcuaCGcgCGCCGc -3'
miRNA:   3'- gCGUGGCUCG--UCUGGCg----GCa-GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 40591 0.69 0.3349
Target:  5'- uCGCACC-AGCAcaucguuguaggucuGGCUGCCGUCGCg-- -3'
miRNA:   3'- -GCGUGGcUCGU---------------CUGGCGGCAGCGgcc -5'
23233 5' -61.6 NC_005259.1 + 61235 0.69 0.33793
Target:  5'- gCGCACCGAGaacucgaucucgGGugCGagcaugcgaCCGUCGCUGGu -3'
miRNA:   3'- -GCGUGGCUCg-----------UCugGC---------GGCAGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.