miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 55902 0.71 0.239018
Target:  5'- uCGCGCCGGGgucgcuggcCAGACCGCUGgucUGCuCGGc -3'
miRNA:   3'- -GCGUGGCUC---------GUCUGGCGGCa--GCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 8818 0.71 0.239018
Target:  5'- uCGCGCCGGGCcggugaguuGACgCGCUG-CGCCGa -3'
miRNA:   3'- -GCGUGGCUCGu--------CUG-GCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 37641 0.7 0.295949
Target:  5'- uGC-CCGAugaccGCAccGCCGCCGcCGCCGGu -3'
miRNA:   3'- gCGuGGCU-----CGUc-UGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 38501 0.7 0.295949
Target:  5'- uCGguCUGuAGCGGGCCGCCGUUGUa-- -3'
miRNA:   3'- -GCguGGC-UCGUCUGGCGGCAGCGgcc -5'
23233 5' -61.6 NC_005259.1 + 52015 0.7 0.295949
Target:  5'- uGCA-CGAGCgucAGGCCGCCGcacugcgcgcugUCGCCGu -3'
miRNA:   3'- gCGUgGCUCG---UCUGGCGGC------------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 35622 0.7 0.289135
Target:  5'- uGCGUCGAGUaguucGGGCCGCCGcCGCUGc -3'
miRNA:   3'- gCGUGGCUCG-----UCUGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 61066 0.7 0.282444
Target:  5'- uGUGCCGGGCAucGGCauaGgCGUCGUCGGc -3'
miRNA:   3'- gCGUGGCUCGU--CUGg--CgGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 36647 0.7 0.275876
Target:  5'- cCGCGaucagCGAGCcGccgcccucGCCGCCGcCGCCGGg -3'
miRNA:   3'- -GCGUg----GCUCGuC--------UGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 48631 0.7 0.275876
Target:  5'- uGCcucGCCGAGaCGGGCUGCCagaucGUCGCCa- -3'
miRNA:   3'- gCG---UGGCUC-GUCUGGCGG-----CAGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 2215 0.7 0.275876
Target:  5'- gCGCACCGAGCGccCgGCC-UCGCCa- -3'
miRNA:   3'- -GCGUGGCUCGUcuGgCGGcAGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 66266 0.7 0.269431
Target:  5'- cCGCGCCGGGCGG-CgGCUcaCGCCGc -3'
miRNA:   3'- -GCGUGGCUCGUCuGgCGGcaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 55132 0.7 0.269431
Target:  5'- cCGUGCCGAGCAGGCCGacaaGguaGuuGGg -3'
miRNA:   3'- -GCGUGGCUCGUCUGGCgg--Cag-CggCC- -5'
23233 5' -61.6 NC_005259.1 + 37240 0.7 0.269431
Target:  5'- cCGUGCCGgauuGGCu-GCCGCCGUUGCCaGGc -3'
miRNA:   3'- -GCGUGGC----UCGucUGGCGGCAGCGG-CC- -5'
23233 5' -61.6 NC_005259.1 + 5492 0.69 0.331891
Target:  5'- aGCGCCGAGCgaGGAUCGagcuaCGcgCGCCGc -3'
miRNA:   3'- gCGUGGCUCG--UCUGGCg----GCa-GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 6201 0.69 0.331891
Target:  5'- aGCAgCguGAGCGGggugaGCCGCCG-CGCCGa -3'
miRNA:   3'- gCGUgG--CUCGUC-----UGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 22522 0.69 0.327413
Target:  5'- gCGCACCGucgccggugauuuccAGCAGuCCGaCC-UCGCCGa -3'
miRNA:   3'- -GCGUGGC---------------UCGUCuGGC-GGcAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 63153 0.69 0.324453
Target:  5'- uCGCccacGuuGAGCAG-CCGCCGcagCGCCGc -3'
miRNA:   3'- -GCG----UggCUCGUCuGGCGGCa--GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 45001 0.69 0.324453
Target:  5'- gGCACC--GCcGACCGCCGgggccgCGCCGc -3'
miRNA:   3'- gCGUGGcuCGuCUGGCGGCa-----GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 23441 0.69 0.31714
Target:  5'- cCGcCACCGccaAGCAGAUUGCUuUCGCaCGGg -3'
miRNA:   3'- -GC-GUGGC---UCGUCUGGCGGcAGCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 47956 0.69 0.331891
Target:  5'- gGUGCCGAu--GGCCGCCG-CGCCGc -3'
miRNA:   3'- gCGUGGCUcguCUGGCGGCaGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.