miRNA display CGI


Results 81 - 100 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 33303 0.68 0.35495
Target:  5'- gGCugCG-GCucGAucCCGCCGUCGgCGGu -3'
miRNA:   3'- gCGugGCuCGu-CU--GGCGGCAGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 46770 0.68 0.35495
Target:  5'- uGCGCCGA-CAG-CCGCgccCGCCGGg -3'
miRNA:   3'- gCGUGGCUcGUCuGGCGgcaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 48163 0.68 0.35495
Target:  5'- uCGC-CCGAaaccGCcc-CCGCCGcCGCCGGg -3'
miRNA:   3'- -GCGuGGCU----CGucuGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 50436 0.68 0.362883
Target:  5'- gGCAgCGGuGCGGGCuCGggGUCGCCGGu -3'
miRNA:   3'- gCGUgGCU-CGUCUG-GCggCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 25363 0.68 0.362883
Target:  5'- -aCGCCGAacgcaCAGACCGCUGUUcgGCUGGa -3'
miRNA:   3'- gcGUGGCUc----GUCUGGCGGCAG--CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 17314 0.68 0.370938
Target:  5'- -aCGCCGAGCGGuACC-CCGagggugUGCCGGu -3'
miRNA:   3'- gcGUGGCUCGUC-UGGcGGCa-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 5371 0.68 0.374195
Target:  5'- uCGCGCCGGGCaAGugcccacacaucaccACCGUCGUcaucacccgCGCUGGc -3'
miRNA:   3'- -GCGUGGCUCG-UC---------------UGGCGGCA---------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 23674 0.68 0.374195
Target:  5'- cCGCcgaccCCGAGCAGGCgcacgcagacuaccgCGUCGUgaucgCGCCGGa -3'
miRNA:   3'- -GCGu----GGCUCGUCUG---------------GCGGCA-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 22754 0.67 0.421767
Target:  5'- gCGUACCGAaaCGGcACCGCCaaggCGCUGGu -3'
miRNA:   3'- -GCGUGGCUc-GUC-UGGCGGca--GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 24834 0.67 0.421767
Target:  5'- cCGCACCGAccaaGCAGuCCGUgCGcuaCGCCGa -3'
miRNA:   3'- -GCGUGGCU----CGUCuGGCG-GCa--GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 27208 0.67 0.421767
Target:  5'- cCGCACCgcgagcucgguGAGCGGGCCGaaaUCGCCa- -3'
miRNA:   3'- -GCGUGG-----------CUCGUCUGGCggcAGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 41504 0.67 0.430638
Target:  5'- gGUGgCGGGCAGACCGUgGaUCuGCaCGGg -3'
miRNA:   3'- gCGUgGCUCGUCUGGCGgC-AG-CG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 59397 0.67 0.430638
Target:  5'- cCGCGCgCGAGCGuGACCucgcgcauGgCGUCGgCGGc -3'
miRNA:   3'- -GCGUG-GCUCGU-CUGG--------CgGCAGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 55426 0.67 0.421767
Target:  5'- aGCACCGAGCcGACgaCGCCGacgaacgCGUacaGGg -3'
miRNA:   3'- gCGUGGCUCGuCUG--GCGGCa------GCGg--CC- -5'
23233 5' -61.6 NC_005259.1 + 44766 0.67 0.421767
Target:  5'- aGCACCGAucccGCAucGGCgGUCGagaacagacgcUCGCCGGu -3'
miRNA:   3'- gCGUGGCU----CGU--CUGgCGGC-----------AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 16459 0.67 0.413006
Target:  5'- gGCAUCGGuaccccgccGCAGAUCGCCGUCaa-GGg -3'
miRNA:   3'- gCGUGGCU---------CGUCUGGCGGCAGcggCC- -5'
23233 5' -61.6 NC_005259.1 + 8954 0.67 0.413006
Target:  5'- gCGCGCCGuGGaCGGGCa-CCGU-GCCGGg -3'
miRNA:   3'- -GCGUGGC-UC-GUCUGgcGGCAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 6909 0.67 0.413006
Target:  5'- aCGCGCCGccGCcaucgAGaACCGCCGcCGCCu- -3'
miRNA:   3'- -GCGUGGCu-CG-----UC-UGGCGGCaGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 3094 0.67 0.413006
Target:  5'- cCGCGCagcgauGAGCGGGCgGCCaUUGCgCGGc -3'
miRNA:   3'- -GCGUGg-----CUCGUCUGgCGGcAGCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 25913 0.67 0.434217
Target:  5'- cCGC-CUGAGCcgccGCCGCCGguccggugagcgcaCGCCGGu -3'
miRNA:   3'- -GCGuGGCUCGuc--UGGCGGCa-------------GCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.