Results 121 - 140 of 142 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 53722 | 0.66 | 0.505259 |
Target: 5'- cCGCGCC--GCuGAUgGUgaUGUCGCCGGg -3' miRNA: 3'- -GCGUGGcuCGuCUGgCG--GCAGCGGCC- -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 38160 | 0.66 | 0.505259 |
Target: 5'- uCGCGCCGAugacGguGAUCGgugccUCGUCGCUGu -3' miRNA: 3'- -GCGUGGCU----CguCUGGC-----GGCAGCGGCc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 7204 | 0.66 | 0.512062 |
Target: 5'- aCGCACCGGGCugcgguggaucugcGugaugaacgacGGCaGCCG-CGCCGGu -3' miRNA: 3'- -GCGUGGCUCG--------------U-----------CUGgCGGCaGCGGCC- -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 36011 | 0.66 | 0.514989 |
Target: 5'- uGCACCGAGguGGCCaG-CGagGUCGa -3' miRNA: 3'- gCGUGGCUCguCUGG-CgGCagCGGCc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 44461 | 0.66 | 0.514989 |
Target: 5'- --gACCGGGgAuGCCGCCGcccUgGCCGGg -3' miRNA: 3'- gcgUGGCUCgUcUGGCGGC---AgCGGCC- -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 14879 | 0.66 | 0.514989 |
Target: 5'- uGC-CCGAGCc-GCCGCCGUauggucaaGCCa- -3' miRNA: 3'- gCGuGGCUCGucUGGCGGCAg-------CGGcc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 42815 | 0.66 | 0.495609 |
Target: 5'- uGCACUGuGGUAuuGCUGCCGcCGCCGa -3' miRNA: 3'- gCGUGGC-UCGUc-UGGCGGCaGCGGCc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 10084 | 0.66 | 0.495609 |
Target: 5'- aCGCcgaCGAGUAGACC-CCGagGCCa- -3' miRNA: 3'- -GCGug-GCUCGUCUGGcGGCagCGGcc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 46523 | 0.66 | 0.514989 |
Target: 5'- cCGCgaGCCGGucGgGGAUCGCCGagaucuggUCGCCGa -3' miRNA: 3'- -GCG--UGGCU--CgUCUGGCGGC--------AGCGGCc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 59286 | 0.66 | 0.467181 |
Target: 5'- aGCGgUGuGCAGACCuacGCUGUCGUggCGGc -3' miRNA: 3'- gCGUgGCuCGUCUGG---CGGCAGCG--GCC- -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 6108 | 0.66 | 0.467181 |
Target: 5'- -uCGCCGAgGCcgAGGCCGCCGcuaCGCgGGc -3' miRNA: 3'- gcGUGGCU-CG--UCUGGCGGCa--GCGgCC- -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 58576 | 0.66 | 0.467181 |
Target: 5'- cCGgAUCGcGGCGcGGCUGCCGg-GCCGGa -3' miRNA: 3'- -GCgUGGC-UCGU-CUGGCGGCagCGGCC- -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 64131 | 0.66 | 0.467181 |
Target: 5'- cCGCcugACCGAGCGGcCCGUCGgcgaUGCCc- -3' miRNA: 3'- -GCG---UGGCUCGUCuGGCGGCa---GCGGcc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 47471 | 0.66 | 0.476566 |
Target: 5'- aGcCACCGAGguGAUCGC-GUCaCCGa -3' miRNA: 3'- gC-GUGGCUCguCUGGCGgCAGcGGCc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 9711 | 0.66 | 0.476566 |
Target: 5'- gGCACCGuccuCGGGCCgGUCGagcUCGCCGa -3' miRNA: 3'- gCGUGGCuc--GUCUGG-CGGC---AGCGGCc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 19230 | 0.66 | 0.480346 |
Target: 5'- gGaCACCGAGUcggcgaugaucgauGGCCGCC--UGCCGGg -3' miRNA: 3'- gC-GUGGCUCGu-------------CUGGCGGcaGCGGCC- -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 6353 | 0.66 | 0.486043 |
Target: 5'- gGUGCCGuacguGCGca-CGuuGUCGCCGGg -3' miRNA: 3'- gCGUGGCu----CGUcugGCggCAGCGGCC- -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 36134 | 0.66 | 0.486043 |
Target: 5'- uGgGCCGc-CGGGCUGuCCGUCGCCa- -3' miRNA: 3'- gCgUGGCucGUCUGGC-GGCAGCGGcc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 62006 | 0.66 | 0.486043 |
Target: 5'- gGCACCGuGCGGuguacCCGCuCG-CGCUGu -3' miRNA: 3'- gCGUGGCuCGUCu----GGCG-GCaGCGGCc -5' |
|||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 30967 | 0.66 | 0.491772 |
Target: 5'- -aCACCGAugguguaGCAGAuucccucguuguccCCGCCGUgggGCCGGa -3' miRNA: 3'- gcGUGGCU-------CGUCU--------------GGCGGCAg--CGGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home