Results 61 - 80 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 47956 | 0.69 | 0.331891 |
Target: 5'- gGUGCCGAu--GGCCGCCG-CGCCGc -3' miRNA: 3'- gCGUGGCUcguCUGGCGGCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 40591 | 0.69 | 0.3349 |
Target: 5'- uCGCACC-AGCAcaucguuguaggucuGGCUGCCGUCGCg-- -3' miRNA: 3'- -GCGUGGcUCGU---------------CUGGCGGCAGCGgcc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 61235 | 0.69 | 0.33793 |
Target: 5'- gCGCACCGAGaacucgaucucgGGugCGagcaugcgaCCGUCGCUGGu -3' miRNA: 3'- -GCGUGGCUCg-----------UCugGC---------GGCAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 58771 | 0.69 | 0.339453 |
Target: 5'- aCGCugCGGGCGcuGugCGCCgGUCGaggCGGu -3' miRNA: 3'- -GCGugGCUCGU--CugGCGG-CAGCg--GCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 7569 | 0.69 | 0.339453 |
Target: 5'- aCGcCACCGuuCGcGCCGCCGcCGCCGa -3' miRNA: 3'- -GC-GUGGCucGUcUGGCGGCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 45748 | 0.69 | 0.339453 |
Target: 5'- gCGCACCGccucGgGGAUgagcaCGCCcUCGCCGGg -3' miRNA: 3'- -GCGUGGCu---CgUCUG-----GCGGcAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 26434 | 0.69 | 0.339453 |
Target: 5'- aCGCaccGCCGAGCGGGCgGgCCGguggGCCGa -3' miRNA: 3'- -GCG---UGGCUCGUCUGgC-GGCag--CGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 28749 | 0.69 | 0.347139 |
Target: 5'- aCGCGcCCGAGCgugAGAUCGUCGccggUGCCGa -3' miRNA: 3'- -GCGU-GGCUCG---UCUGGCGGCa---GCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 42198 | 0.69 | 0.347915 |
Target: 5'- gCGCGCCGucGCGauggaugcccgccgcGCCGCCGUCcCCGGc -3' miRNA: 3'- -GCGUGGCu-CGUc--------------UGGCGGCAGcGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 48163 | 0.68 | 0.35495 |
Target: 5'- uCGC-CCGAaaccGCcc-CCGCCGcCGCCGGg -3' miRNA: 3'- -GCGuGGCU----CGucuGGCGGCaGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 46770 | 0.68 | 0.35495 |
Target: 5'- uGCGCCGA-CAG-CCGCgccCGCCGGg -3' miRNA: 3'- gCGUGGCUcGUCuGGCGgcaGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 33303 | 0.68 | 0.35495 |
Target: 5'- gGCugCG-GCucGAucCCGCCGUCGgCGGu -3' miRNA: 3'- gCGugGCuCGu-CU--GGCGGCAGCgGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 50436 | 0.68 | 0.362883 |
Target: 5'- gGCAgCGGuGCGGGCuCGggGUCGCCGGu -3' miRNA: 3'- gCGUgGCU-CGUCUG-GCggCAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 25363 | 0.68 | 0.362883 |
Target: 5'- -aCGCCGAacgcaCAGACCGCUGUUcgGCUGGa -3' miRNA: 3'- gcGUGGCUc----GUCUGGCGGCAG--CGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 17314 | 0.68 | 0.370938 |
Target: 5'- -aCGCCGAGCGGuACC-CCGagggugUGCCGGu -3' miRNA: 3'- gcGUGGCUCGUC-UGGcGGCa-----GCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 23674 | 0.68 | 0.374195 |
Target: 5'- cCGCcgaccCCGAGCAGGCgcacgcagacuaccgCGUCGUgaucgCGCCGGa -3' miRNA: 3'- -GCGu----GGCUCGUCUG---------------GCGGCA-----GCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 5371 | 0.68 | 0.374195 |
Target: 5'- uCGCGCCGGGCaAGugcccacacaucaccACCGUCGUcaucacccgCGCUGGc -3' miRNA: 3'- -GCGUGGCUCG-UC---------------UGGCGGCA---------GCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 42542 | 0.68 | 0.379115 |
Target: 5'- gGCACCGAGguGGCgggcaGCuCGgcgagcaGCCGGu -3' miRNA: 3'- gCGUGGCUCguCUGg----CG-GCag-----CGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 19868 | 0.68 | 0.379115 |
Target: 5'- uCGCGCCc-GCcgGGAUCGCCGaCGCCGc -3' miRNA: 3'- -GCGUGGcuCG--UCUGGCGGCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 775 | 0.68 | 0.387411 |
Target: 5'- cCGCGCCGAgGCGG-CUGCCcUCgGuuGGg -3' miRNA: 3'- -GCGUGGCU-CGUCuGGCGGcAG-CggCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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