miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 46523 0.66 0.514989
Target:  5'- cCGCgaGCCGGucGgGGAUCGCCGagaucuggUCGCCGa -3'
miRNA:   3'- -GCG--UGGCU--CgUCUGGCGGC--------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 45748 0.69 0.339453
Target:  5'- gCGCACCGccucGgGGAUgagcaCGCCcUCGCCGGg -3'
miRNA:   3'- -GCGUGGCu---CgUCUG-----GCGGcAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 45630 0.74 0.160523
Target:  5'- cCGgGCCGGGCAGcgcgccgguGCCGCCGUgaacacCGCCGu -3'
miRNA:   3'- -GCgUGGCUCGUC---------UGGCGGCA------GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 45541 0.75 0.124065
Target:  5'- gGCugCGAGCGGGuuGC--UCGCCGGg -3'
miRNA:   3'- gCGugGCUCGUCUggCGgcAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 45474 0.71 0.263108
Target:  5'- aCGgGCCGAGCuucuGGCCGCUgguggccuugGUCGCUGu -3'
miRNA:   3'- -GCgUGGCUCGu---CUGGCGG----------CAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 45401 0.74 0.168463
Target:  5'- uCGcCGCCGAGCGcgcugauGGCCGCCGcCGCUGc -3'
miRNA:   3'- -GC-GUGGCUCGU-------CUGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 45344 0.67 0.457893
Target:  5'- uGCGCCGccUGGGCCGCCGcguagUCGaCGGg -3'
miRNA:   3'- gCGUGGCucGUCUGGCGGC-----AGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 45001 0.69 0.324453
Target:  5'- gGCACC--GCcGACCGCCGgggccgCGCCGc -3'
miRNA:   3'- gCGUGGcuCGuCUGGCGGCa-----GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 44766 0.67 0.421767
Target:  5'- aGCACCGAucccGCAucGGCgGUCGagaacagacgcUCGCCGGu -3'
miRNA:   3'- gCGUGGCU----CGU--CUGgCGGC-----------AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 44461 0.66 0.514989
Target:  5'- --gACCGGGgAuGCCGCCGcccUgGCCGGg -3'
miRNA:   3'- gcgUGGCUCgUcUGGCGGC---AgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 43873 0.71 0.23329
Target:  5'- aCGaCACCG-GCAGcguuGCCGCCGacauugcccgCGCCGGc -3'
miRNA:   3'- -GC-GUGGCuCGUC----UGGCGGCa---------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 43823 0.72 0.227679
Target:  5'- gCGUACCGccGGacacaGGGCCGCCGcUCGCCa- -3'
miRNA:   3'- -GCGUGGC--UCg----UCUGGCGGC-AGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 43719 0.71 0.250223
Target:  5'- cCGCAUCGAgucgaugGCGGccauGCCGCCGa-GCCGGg -3'
miRNA:   3'- -GCGUGGCU-------CGUC----UGGCGGCagCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 43656 0.66 0.505259
Target:  5'- uGCGCCGAcGguGucguuGCCGaucacaCCGcCGCCGGu -3'
miRNA:   3'- gCGUGGCU-CguC-----UGGC------GGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 43226 0.68 0.39329
Target:  5'- -cCGCCGAGCuGAUgagcgagcugacgaUGCCGcccgCGCCGGg -3'
miRNA:   3'- gcGUGGCUCGuCUG--------------GCGGCa---GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 43031 0.77 0.100593
Target:  5'- uGcCGCCGAGCAGGCCGCCGagcagCGaaccgaCGGg -3'
miRNA:   3'- gC-GUGGCUCGUCUGGCGGCa----GCg-----GCC- -5'
23233 5' -61.6 NC_005259.1 + 42943 0.72 0.211527
Target:  5'- -uCGCCGugGGCgAGGCCGCCGUUGUCGa -3'
miRNA:   3'- gcGUGGC--UCG-UCUGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 42815 0.66 0.495609
Target:  5'- uGCACUGuGGUAuuGCUGCCGcCGCCGa -3'
miRNA:   3'- gCGUGGC-UCGUc-UGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 42542 0.68 0.379115
Target:  5'- gGCACCGAGguGGCgggcaGCuCGgcgagcaGCCGGu -3'
miRNA:   3'- gCGUGGCUCguCUGg----CG-GCag-----CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 42198 0.69 0.347915
Target:  5'- gCGCGCCGucGCGauggaugcccgccgcGCCGCCGUCcCCGGc -3'
miRNA:   3'- -GCGUGGCu-CGUc--------------UGGCGGCAGcGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.