miRNA display CGI


Results 61 - 80 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 41877 0.68 0.404359
Target:  5'- aGCACCGuGGCGGGCCGauaCGcaUGCgGGa -3'
miRNA:   3'- gCGUGGC-UCGUCUGGCg--GCa-GCGgCC- -5'
23233 5' -61.6 NC_005259.1 + 41504 0.67 0.430638
Target:  5'- gGUGgCGGGCAGACCGUgGaUCuGCaCGGg -3'
miRNA:   3'- gCGUgGCUCGUCUGGCGgC-AG-CG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 40591 0.69 0.3349
Target:  5'- uCGCACC-AGCAcaucguuguaggucuGGCUGCCGUCGCg-- -3'
miRNA:   3'- -GCGUGGcUCGU---------------CUGGCGGCAGCGgcc -5'
23233 5' -61.6 NC_005259.1 + 40561 0.67 0.439618
Target:  5'- gCGCGcCCGcGCGGugUuGCUGUCGgCGGc -3'
miRNA:   3'- -GCGU-GGCuCGUCugG-CGGCAGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 40002 0.67 0.448704
Target:  5'- uCGcCGCCGAGCAugagggucuGACCgggacgugauGCUuugagGUCGCCGGu -3'
miRNA:   3'- -GC-GUGGCUCGU---------CUGG----------CGG-----CAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 39326 0.68 0.39329
Target:  5'- uCGCGCCGcuGguGACCGUcaacucgaccacgaCGU-GCCGGg -3'
miRNA:   3'- -GCGUGGCu-CguCUGGCG--------------GCAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 38736 0.71 0.239018
Target:  5'- cCGUACCG-GCGGuggcCCGCCGcagGCCGGu -3'
miRNA:   3'- -GCGUGGCuCGUCu---GGCGGCag-CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 38501 0.7 0.295949
Target:  5'- uCGguCUGuAGCGGGCCGCCGUUGUa-- -3'
miRNA:   3'- -GCguGGC-UCGUCUGGCGGCAGCGgcc -5'
23233 5' -61.6 NC_005259.1 + 38160 0.66 0.505259
Target:  5'- uCGCGCCGAugacGguGAUCGgugccUCGUCGCUGu -3'
miRNA:   3'- -GCGUGGCU----CguCUGGC-----GGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 37641 0.7 0.295949
Target:  5'- uGC-CCGAugaccGCAccGCCGCCGcCGCCGGu -3'
miRNA:   3'- gCGuGGCU-----CGUc-UGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 37240 0.7 0.269431
Target:  5'- cCGUGCCGgauuGGCu-GCCGCCGUUGCCaGGc -3'
miRNA:   3'- -GCGUGGC----UCGucUGGCGGCAGCGG-CC- -5'
23233 5' -61.6 NC_005259.1 + 37184 0.71 0.255069
Target:  5'- gCGCGaggaCGAGCugcGGcccuugccgccaccGCCGCCGcCGCCGGg -3'
miRNA:   3'- -GCGUg---GCUCG---UC--------------UGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 36864 0.66 0.495609
Target:  5'- uGCGCCGuuGCuGGcACCGCCcG-CGCCGa -3'
miRNA:   3'- gCGUGGCu-CG-UC-UGGCGG-CaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 36647 0.7 0.275876
Target:  5'- cCGCGaucagCGAGCcGccgcccucGCCGCCGcCGCCGGg -3'
miRNA:   3'- -GCGUg----GCUCGuC--------UGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 36134 0.66 0.486043
Target:  5'- uGgGCCGc-CGGGCUGuCCGUCGCCa- -3'
miRNA:   3'- gCgUGGCucGUCUGGC-GGCAGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 36011 0.66 0.514989
Target:  5'- uGCACCGAGguGGCCaG-CGagGUCGa -3'
miRNA:   3'- gCGUGGCUCguCUGG-CgGCagCGGCc -5'
23233 5' -61.6 NC_005259.1 + 35622 0.7 0.289135
Target:  5'- uGCGUCGAGUaguucGGGCCGCCGcCGCUGc -3'
miRNA:   3'- gCGUGGCUCG-----UCUGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 35520 0.8 0.05738
Target:  5'- cCGcCGCCGGGCAcaccGcCCGCCGUCGCCGa -3'
miRNA:   3'- -GC-GUGGCUCGU----CuGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 35257 0.67 0.457893
Target:  5'- uCGCGuuGuucGC-GcCCGCCG-CGCCGGg -3'
miRNA:   3'- -GCGUggCu--CGuCuGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 33303 0.68 0.35495
Target:  5'- gGCugCG-GCucGAucCCGCCGUCGgCGGu -3'
miRNA:   3'- gCGugGCuCGu-CU--GGCGGCAGCgGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.