Results 121 - 140 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 9711 | 0.66 | 0.476566 |
Target: 5'- gGCACCGuccuCGGGCCgGUCGagcUCGCCGa -3' miRNA: 3'- gCGUGGCuc--GUCUGG-CGGC---AGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 8954 | 0.67 | 0.413006 |
Target: 5'- gCGCGCCGuGGaCGGGCa-CCGU-GCCGGg -3' miRNA: 3'- -GCGUGGC-UC-GUCUGgcGGCAgCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 8818 | 0.71 | 0.239018 |
Target: 5'- uCGCGCCGGGCcggugaguuGACgCGCUG-CGCCGa -3' miRNA: 3'- -GCGUGGCUCGu--------CUG-GCGGCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 7641 | 0.81 | 0.046195 |
Target: 5'- cCGuCGCCGAGUucGACCGCCGUCGUCGu -3' miRNA: 3'- -GC-GUGGCUCGu-CUGGCGGCAGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 7569 | 0.69 | 0.339453 |
Target: 5'- aCGcCACCGuuCGcGCCGCCGcCGCCGa -3' miRNA: 3'- -GC-GUGGCucGUcUGGCGGCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 7314 | 0.8 | 0.063917 |
Target: 5'- uGC-CCGAGUucACCGCCGUCGCCGa -3' miRNA: 3'- gCGuGGCUCGucUGGCGGCAGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 7204 | 0.66 | 0.512062 |
Target: 5'- aCGCACCGGGCugcgguggaucugcGugaugaacgacGGCaGCCG-CGCCGGu -3' miRNA: 3'- -GCGUGGCUCG--------------U-----------CUGgCGGCaGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 6909 | 0.67 | 0.413006 |
Target: 5'- aCGCGCCGccGCcaucgAGaACCGCCGcCGCCu- -3' miRNA: 3'- -GCGUGGCu-CG-----UC-UGGCGGCaGCGGcc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 6443 | 0.71 | 0.239018 |
Target: 5'- gGCACCGucgcGCuGAUCGgcagCGUCGCCGGu -3' miRNA: 3'- gCGUGGCu---CGuCUGGCg---GCAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 6353 | 0.66 | 0.486043 |
Target: 5'- gGUGCCGuacguGCGca-CGuuGUCGCCGGg -3' miRNA: 3'- gCGUGGCu----CGUcugGCggCAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 6201 | 0.69 | 0.331891 |
Target: 5'- aGCAgCguGAGCGGggugaGCCGCCG-CGCCGa -3' miRNA: 3'- gCGUgG--CUCGUC-----UGGCGGCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 6108 | 0.66 | 0.467181 |
Target: 5'- -uCGCCGAgGCcgAGGCCGCCGcuaCGCgGGc -3' miRNA: 3'- gcGUGGCU-CG--UCUGGCGGCa--GCGgCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 5492 | 0.69 | 0.331891 |
Target: 5'- aGCGCCGAGCgaGGAUCGagcuaCGcgCGCCGc -3' miRNA: 3'- gCGUGGCUCG--UCUGGCg----GCa-GCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 5371 | 0.68 | 0.374195 |
Target: 5'- uCGCGCCGGGCaAGugcccacacaucaccACCGUCGUcaucacccgCGCUGGc -3' miRNA: 3'- -GCGUGGCUCG-UC---------------UGGCGGCA---------GCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 5072 | 0.66 | 0.467181 |
Target: 5'- uGgGCCGGGUcgacGGGCCGgUGUCaCCGGc -3' miRNA: 3'- gCgUGGCUCG----UCUGGCgGCAGcGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 3990 | 0.67 | 0.448704 |
Target: 5'- aGCACgCGAugGCGGGCCGC-GUCccCCGGu -3' miRNA: 3'- gCGUG-GCU--CGUCUGGCGgCAGc-GGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 3270 | 0.67 | 0.448704 |
Target: 5'- uGC-UCGGGUGGuuucccgucGCCGCC-UCGCCGGu -3' miRNA: 3'- gCGuGGCUCGUC---------UGGCGGcAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 3094 | 0.67 | 0.413006 |
Target: 5'- cCGCGCagcgauGAGCGGGCgGCCaUUGCgCGGc -3' miRNA: 3'- -GCGUGg-----CUCGUCUGgCGGcAGCG-GCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 2215 | 0.7 | 0.275876 |
Target: 5'- gCGCACCGAGCGccCgGCC-UCGCCa- -3' miRNA: 3'- -GCGUGGCUCGUcuGgCGGcAGCGGcc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 2146 | 0.66 | 0.495609 |
Target: 5'- cCGCACgGugcuggccAGCGGcgucgaGCCGCCGgUUGCCGa -3' miRNA: 3'- -GCGUGgC--------UCGUC------UGGCGGC-AGCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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