miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 17731 0.79 0.070035
Target:  5'- aCGCACCGuggcuGCucgacgcgauccgugAGGCCGCCGcgCGCCGGg -3'
miRNA:   3'- -GCGUGGCu----CG---------------UCUGGCGGCa-GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 7314 0.8 0.063917
Target:  5'- uGC-CCGAGUucACCGCCGUCGCCGa -3'
miRNA:   3'- gCGuGGCUCGucUGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 35520 0.8 0.05738
Target:  5'- cCGcCGCCGGGCAcaccGcCCGCCGUCGCCGa -3'
miRNA:   3'- -GC-GUGGCUCGU----CuGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 7641 0.81 0.046195
Target:  5'- cCGuCGCCGAGUucGACCGCCGUCGUCGu -3'
miRNA:   3'- -GC-GUGGCUCGu-CUGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 26108 0.87 0.01819
Target:  5'- ---cCCGAGCAGACCGCCGcCGCCGGu -3'
miRNA:   3'- gcguGGCUCGUCUGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 14334 0.74 0.148672
Target:  5'- cCGC-CCGcguGCGGGCCGCCGaCGCCa- -3'
miRNA:   3'- -GCGuGGCu--CGUCUGGCGGCaGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 45630 0.74 0.160523
Target:  5'- cCGgGCCGGGCAGcgcgccgguGCCGCCGUgaacacCGCCGu -3'
miRNA:   3'- -GCgUGGCUCGUC---------UGGCGGCA------GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 24115 0.72 0.227679
Target:  5'- gGgACCGGGCGGggacuacaccGCCGCCGcccugcUCGCCGa -3'
miRNA:   3'- gCgUGGCUCGUC----------UGGCGGC------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 1873 0.72 0.227679
Target:  5'- cCGCGuuCCGuaAGCAGGCCGCCGagaUCGCgCGa -3'
miRNA:   3'- -GCGU--GGC--UCGUCUGGCGGC---AGCG-GCc -5'
23233 5' -61.6 NC_005259.1 + 65986 0.72 0.211527
Target:  5'- gCGCGCCGAGCAG-CCGCuCGaCGUggugcgcacccuCGGg -3'
miRNA:   3'- -GCGUGGCUCGUCuGGCG-GCaGCG------------GCC- -5'
23233 5' -61.6 NC_005259.1 + 42943 0.72 0.211527
Target:  5'- -uCGCCGugGGCgAGGCCGCCGUUGUCGa -3'
miRNA:   3'- gcGUGGC--UCG-UCUGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 17783 0.72 0.211527
Target:  5'- gCGCACCGAGCGugcgcACCGCgauagCGagGCCGGu -3'
miRNA:   3'- -GCGUGGCUCGUc----UGGCG-----GCagCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 20245 0.73 0.191534
Target:  5'- cCGCACCcuguGC-GACaCGCCG-CGCCGGg -3'
miRNA:   3'- -GCGUGGcu--CGuCUG-GCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 60278 0.73 0.182173
Target:  5'- gCGCuGCCGGGCGG-CCaUCGUCGUCGGu -3'
miRNA:   3'- -GCG-UGGCUCGUCuGGcGGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 46904 0.73 0.177645
Target:  5'- gCGCccGCCGAGCAGuCCGCgugCGcCGCCGa -3'
miRNA:   3'- -GCG--UGGCUCGUCuGGCG---GCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 15531 0.73 0.173218
Target:  5'- aGCACU---CAGGCCGCCGUCacugGCCGGu -3'
miRNA:   3'- gCGUGGcucGUCUGGCGGCAG----CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 60503 0.73 0.172781
Target:  5'- aCGCGCCGGuguugucGUAGugCGCCaUgGCCGGg -3'
miRNA:   3'- -GCGUGGCU-------CGUCugGCGGcAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 26067 0.74 0.16889
Target:  5'- cCGcCGCCGAGCAGuCCcccgagGCCGcCGCCGa -3'
miRNA:   3'- -GC-GUGGCUCGUCuGG------CGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 22674 0.74 0.16889
Target:  5'- aCGCACUGAccgccGCcGAuuuccCCGCCGUCGCCGu -3'
miRNA:   3'- -GCGUGGCU-----CGuCU-----GGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 45401 0.74 0.168463
Target:  5'- uCGcCGCCGAGCGcgcugauGGCCGCCGcCGCUGc -3'
miRNA:   3'- -GC-GUGGCUCGU-------CUGGCGGCaGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.