miRNA display CGI


Results 101 - 120 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 23441 0.69 0.31714
Target:  5'- cCGcCACCGccaAGCAGAUUGCUuUCGCaCGGg -3'
miRNA:   3'- -GC-GUGGC---UCGUCUGGCGGcAGCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 45001 0.69 0.324453
Target:  5'- gGCACC--GCcGACCGCCGgggccgCGCCGc -3'
miRNA:   3'- gCGUGGcuCGuCUGGCGGCa-----GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 63153 0.69 0.324453
Target:  5'- uCGCccacGuuGAGCAG-CCGCCGcagCGCCGc -3'
miRNA:   3'- -GCG----UggCUCGUCuGGCGGCa--GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 22522 0.69 0.327413
Target:  5'- gCGCACCGucgccggugauuuccAGCAGuCCGaCC-UCGCCGa -3'
miRNA:   3'- -GCGUGGC---------------UCGUCuGGC-GGcAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 6201 0.69 0.331891
Target:  5'- aGCAgCguGAGCGGggugaGCCGCCG-CGCCGa -3'
miRNA:   3'- gCGUgG--CUCGUC-----UGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 2215 0.7 0.275876
Target:  5'- gCGCACCGAGCGccCgGCC-UCGCCa- -3'
miRNA:   3'- -GCGUGGCUCGUcuGgCGGcAGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 66266 0.7 0.269431
Target:  5'- cCGCGCCGGGCGG-CgGCUcaCGCCGc -3'
miRNA:   3'- -GCGUGGCUCGUCuGgCGGcaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 58669 0.71 0.237863
Target:  5'- uGCACCGGggugcagcuuccaucGCGGggucggcucgucgccGCCGCCGucaccaUCGCCGGg -3'
miRNA:   3'- gCGUGGCU---------------CGUC---------------UGGCGGC------AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 6443 0.71 0.239018
Target:  5'- gGCACCGucgcGCuGAUCGgcagCGUCGCCGGu -3'
miRNA:   3'- gCGUGGCu---CGuCUGGCg---GCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 55902 0.71 0.239018
Target:  5'- uCGCGCCGGGgucgcuggcCAGACCGCUGgucUGCuCGGc -3'
miRNA:   3'- -GCGUGGCUC---------GUCUGGCGGCa--GCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 8818 0.71 0.239018
Target:  5'- uCGCGCCGGGCcggugaguuGACgCGCUG-CGCCGa -3'
miRNA:   3'- -GCGUGGCUCGu--------CUG-GCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 38736 0.71 0.239018
Target:  5'- cCGUACCG-GCGGuggcCCGCCGcagGCCGGu -3'
miRNA:   3'- -GCGUGGCuCGUCu---GGCGGCag-CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 43719 0.71 0.250223
Target:  5'- cCGCAUCGAgucgaugGCGGccauGCCGCCGa-GCCGGg -3'
miRNA:   3'- -GCGUGGCU-------CGUC----UGGCGGCagCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 12213 0.71 0.250825
Target:  5'- uGCACCG-GCGcACCGCCcgcUgGCCGGg -3'
miRNA:   3'- gCGUGGCuCGUcUGGCGGc--AgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 13440 0.71 0.250825
Target:  5'- cCGCGCUaGGCGuGACCGUCGgcgcggCGCUGGu -3'
miRNA:   3'- -GCGUGGcUCGU-CUGGCGGCa-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 37184 0.71 0.255069
Target:  5'- gCGCGaggaCGAGCugcGGcccuugccgccaccGCCGCCGcCGCCGGg -3'
miRNA:   3'- -GCGUg---GCUCG---UC--------------UGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 57947 0.71 0.256906
Target:  5'- aGCACCGAgGCcauGGCCcCCauggucgagGUCGCCGGg -3'
miRNA:   3'- gCGUGGCU-CGu--CUGGcGG---------CAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 45474 0.71 0.263108
Target:  5'- aCGgGCCGAGCuucuGGCCGCUgguggccuugGUCGCUGu -3'
miRNA:   3'- -GCgUGGCUCGu---CUGGCGG----------CAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 37240 0.7 0.269431
Target:  5'- cCGUGCCGgauuGGCu-GCCGCCGUUGCCaGGc -3'
miRNA:   3'- -GCGUGGC----UCGucUGGCGGCAGCGG-CC- -5'
23233 5' -61.6 NC_005259.1 + 55132 0.7 0.269431
Target:  5'- cCGUGCCGAGCAGGCCGacaaGguaGuuGGg -3'
miRNA:   3'- -GCGUGGCUCGUCUGGCgg--Cag-CggCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.