Results 121 - 140 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23233 | 5' | -61.6 | NC_005259.1 | + | 28749 | 0.69 | 0.347139 |
Target: 5'- aCGCGcCCGAGCgugAGAUCGUCGccggUGCCGa -3' miRNA: 3'- -GCGU-GGCUCG---UCUGGCGGCa---GCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 42198 | 0.69 | 0.347915 |
Target: 5'- gCGCGCCGucGCGauggaugcccgccgcGCCGCCGUCcCCGGc -3' miRNA: 3'- -GCGUGGCu-CGUc--------------UGGCGGCAGcGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 11308 | 0.69 | 0.309952 |
Target: 5'- gCGUgagGCCGAGaCGGGCgCGCagcuCGUCGUCGGu -3' miRNA: 3'- -GCG---UGGCUC-GUCUG-GCG----GCAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 37641 | 0.7 | 0.295949 |
Target: 5'- uGC-CCGAugaccGCAccGCCGCCGcCGCCGGu -3' miRNA: 3'- gCGuGGCU-----CGUc-UGGCGGCaGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 38501 | 0.7 | 0.295949 |
Target: 5'- uCGguCUGuAGCGGGCCGCCGUUGUa-- -3' miRNA: 3'- -GCguGGC-UCGUCUGGCGGCAGCGgcc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 43719 | 0.71 | 0.250223 |
Target: 5'- cCGCAUCGAgucgaugGCGGccauGCCGCCGa-GCCGGg -3' miRNA: 3'- -GCGUGGCU-------CGUC----UGGCGGCagCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 12213 | 0.71 | 0.250825 |
Target: 5'- uGCACCG-GCGcACCGCCcgcUgGCCGGg -3' miRNA: 3'- gCGUGGCuCGUcUGGCGGc--AgCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 13440 | 0.71 | 0.250825 |
Target: 5'- cCGCGCUaGGCGuGACCGUCGgcgcggCGCUGGu -3' miRNA: 3'- -GCGUGGcUCGU-CUGGCGGCa-----GCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 37184 | 0.71 | 0.255069 |
Target: 5'- gCGCGaggaCGAGCugcGGcccuugccgccaccGCCGCCGcCGCCGGg -3' miRNA: 3'- -GCGUg---GCUCG---UC--------------UGGCGGCaGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 57947 | 0.71 | 0.256906 |
Target: 5'- aGCACCGAgGCcauGGCCcCCauggucgagGUCGCCGGg -3' miRNA: 3'- gCGUGGCU-CGu--CUGGcGG---------CAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 45474 | 0.71 | 0.263108 |
Target: 5'- aCGgGCCGAGCuucuGGCCGCUgguggccuugGUCGCUGu -3' miRNA: 3'- -GCgUGGCUCGu---CUGGCGG----------CAGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 37240 | 0.7 | 0.269431 |
Target: 5'- cCGUGCCGgauuGGCu-GCCGCCGUUGCCaGGc -3' miRNA: 3'- -GCGUGGC----UCGucUGGCGGCAGCGG-CC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 55132 | 0.7 | 0.269431 |
Target: 5'- cCGUGCCGAGCAGGCCGacaaGguaGuuGGg -3' miRNA: 3'- -GCGUGGCUCGUCUGGCgg--Cag-CggCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 66266 | 0.7 | 0.269431 |
Target: 5'- cCGCGCCGGGCGG-CgGCUcaCGCCGc -3' miRNA: 3'- -GCGUGGCUCGUCuGgCGGcaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 2215 | 0.7 | 0.275876 |
Target: 5'- gCGCACCGAGCGccCgGCC-UCGCCa- -3' miRNA: 3'- -GCGUGGCUCGUcuGgCGGcAGCGGcc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 48631 | 0.7 | 0.275876 |
Target: 5'- uGCcucGCCGAGaCGGGCUGCCagaucGUCGCCa- -3' miRNA: 3'- gCG---UGGCUC-GUCUGGCGG-----CAGCGGcc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 36647 | 0.7 | 0.275876 |
Target: 5'- cCGCGaucagCGAGCcGccgcccucGCCGCCGcCGCCGGg -3' miRNA: 3'- -GCGUg----GCUCGuC--------UGGCGGCaGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 61066 | 0.7 | 0.282444 |
Target: 5'- uGUGCCGGGCAucGGCauaGgCGUCGUCGGc -3' miRNA: 3'- gCGUGGCUCGU--CUGg--CgGCAGCGGCC- -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 35622 | 0.7 | 0.289135 |
Target: 5'- uGCGUCGAGUaguucGGGCCGCCGcCGCUGc -3' miRNA: 3'- gCGUGGCUCG-----UCUGGCGGCaGCGGCc -5' |
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23233 | 5' | -61.6 | NC_005259.1 | + | 52015 | 0.7 | 0.295949 |
Target: 5'- uGCA-CGAGCgucAGGCCGCCGcacugcgcgcugUCGCCGu -3' miRNA: 3'- gCGUgGCUCG---UCUGGCGGC------------AGCGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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