miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23234 5' -49.8 NC_005259.1 + 13414 0.66 0.969693
Target:  5'- --cUUCCUggccggGGUCGccgccgGGGCCGCGcuagGCGu -3'
miRNA:   3'- cuaAAGGAa-----CUAGCa-----CCCGGUGU----UGC- -5'
23234 5' -49.8 NC_005259.1 + 43908 0.67 0.954615
Target:  5'- ----gCCggcUGAUCGaUGGGCaGCGACGa -3'
miRNA:   3'- cuaaaGGa--ACUAGC-ACCCGgUGUUGC- -5'
23234 5' -49.8 NC_005259.1 + 49855 0.67 0.950169
Target:  5'- ----cCCgagGAUCGUuGGUCACGACGc -3'
miRNA:   3'- cuaaaGGaa-CUAGCAcCCGGUGUUGC- -5'
23234 5' -49.8 NC_005259.1 + 16216 0.67 0.950169
Target:  5'- --gUUCC-UGAUCagGUGGGCCG-AACGc -3'
miRNA:   3'- cuaAAGGaACUAG--CACCCGGUgUUGC- -5'
23234 5' -49.8 NC_005259.1 + 7926 0.68 0.923661
Target:  5'- ----cCCUUGGucUCGUGGGCCuucuuGCGc -3'
miRNA:   3'- cuaaaGGAACU--AGCACCCGGugu--UGC- -5'
23234 5' -49.8 NC_005259.1 + 2178 0.69 0.866365
Target:  5'- cGGUUgCCgaGGUCaUGGGCCGCuACGg -3'
miRNA:   3'- -CUAAaGGaaCUAGcACCCGGUGuUGC- -5'
23234 5' -49.8 NC_005259.1 + 45454 0.7 0.857986
Target:  5'- ---gUCCUUGAUCGgGGuGCCG-AACGg -3'
miRNA:   3'- cuaaAGGAACUAGCaCC-CGGUgUUGC- -5'
23234 5' -49.8 NC_005259.1 + 5062 0.71 0.812548
Target:  5'- ----gUCgaGAUCGUGGGCCGgguCGACGg -3'
miRNA:   3'- cuaaaGGaaCUAGCACCCGGU---GUUGC- -5'
23234 5' -49.8 NC_005259.1 + 17518 0.75 0.584802
Target:  5'- ---aUCCgaGcUCGUGGGCaCACAGCGa -3'
miRNA:   3'- cuaaAGGaaCuAGCACCCG-GUGUUGC- -5'
23234 5' -49.8 NC_005259.1 + 45495 0.75 0.584802
Target:  5'- uGGUggCCUUGGUCGcUGuGGCCACcGCGc -3'
miRNA:   3'- -CUAaaGGAACUAGC-AC-CCGGUGuUGC- -5'
23234 5' -49.8 NC_005259.1 + 47131 1.09 0.004761
Target:  5'- uGAUUUCCUUGAUCGUGGGCCACAACGu -3'
miRNA:   3'- -CUAAAGGAACUAGCACCCGGUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.