miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23235 5' -55.6 NC_005259.1 + 46404 1.12 0.000727
Target:  5'- gGUGAGGGCAUCGAAACCGGGCUGUGCa -3'
miRNA:   3'- -CACUCCCGUAGCUUUGGCCCGACACG- -5'
23235 5' -55.6 NC_005259.1 + 45852 0.66 0.771936
Target:  5'- --cGGGGCcggUGGGACCGGGCa-UGCc -3'
miRNA:   3'- cacUCCCGua-GCUUUGGCCCGacACG- -5'
23235 5' -55.6 NC_005259.1 + 60762 0.66 0.771936
Target:  5'- -aGucGGCucggCGAGGuuGGGCUGcGCg -3'
miRNA:   3'- caCucCCGua--GCUUUggCCCGACaCG- -5'
23235 5' -55.6 NC_005259.1 + 54491 0.66 0.761915
Target:  5'- -cGAGGGuCAUCGG---CGGGCaUGgcgGCg -3'
miRNA:   3'- caCUCCC-GUAGCUuugGCCCG-ACa--CG- -5'
23235 5' -55.6 NC_005259.1 + 8960 0.66 0.73112
Target:  5'- cGUGGacGGGCAcCGu-GCCGGGaCguagGUGCc -3'
miRNA:   3'- -CACU--CCCGUaGCuuUGGCCC-Ga---CACG- -5'
23235 5' -55.6 NC_005259.1 + 7174 0.67 0.714322
Target:  5'- -cGAGGGCAccggCGAgugcccggccugcggAcgcACCGGGCUGcgGUg -3'
miRNA:   3'- caCUCCCGUa---GCU---------------U---UGGCCCGACa-CG- -5'
23235 5' -55.6 NC_005259.1 + 7336 0.67 0.699456
Target:  5'- -cGAGuaCGUCGAGGCCGGacagacguucguGCUGUGg -3'
miRNA:   3'- caCUCccGUAGCUUUGGCC------------CGACACg -5'
23235 5' -55.6 NC_005259.1 + 10183 0.67 0.688759
Target:  5'- cUGAGGGCAgcacaUCGugaugacGACCGGGCa--GCu -3'
miRNA:   3'- cACUCCCGU-----AGCu------UUGGCCCGacaCG- -5'
23235 5' -55.6 NC_005259.1 + 56063 0.67 0.67801
Target:  5'- uUGAuGGCGUCGAGACCGucgaGCagaucgGUGCu -3'
miRNA:   3'- cACUcCCGUAGCUUUGGCc---CGa-----CACG- -5'
23235 5' -55.6 NC_005259.1 + 28867 0.67 0.667218
Target:  5'- -cGAGGGaCGUUG-GGCCGGGUacGUGUu -3'
miRNA:   3'- caCUCCC-GUAGCuUUGGCCCGa-CACG- -5'
23235 5' -55.6 NC_005259.1 + 25504 0.67 0.656394
Target:  5'- cGUGAGGGCAaaaaggcccUCGA--CCGuGGCaucgcguggGUGCu -3'
miRNA:   3'- -CACUCCCGU---------AGCUuuGGC-CCGa--------CACG- -5'
23235 5' -55.6 NC_005259.1 + 51528 0.67 0.656394
Target:  5'- cGUGAccucGuGCA-CGggGCCGGGCaaGUGCa -3'
miRNA:   3'- -CACUc---C-CGUaGCuuUGGCCCGa-CACG- -5'
23235 5' -55.6 NC_005259.1 + 65582 0.68 0.623831
Target:  5'- -gGAcGGGCGUC-AAACCGGGCUu--- -3'
miRNA:   3'- caCU-CCCGUAGcUUUGGCCCGAcacg -5'
23235 5' -55.6 NC_005259.1 + 30427 0.68 0.623831
Target:  5'- cGUGA-GGCAgcgCGAugAGCCGuGGCUGUucaGCu -3'
miRNA:   3'- -CACUcCCGUa--GCU--UUGGC-CCGACA---CG- -5'
23235 5' -55.6 NC_005259.1 + 23293 0.69 0.569815
Target:  5'- gGUGGuuGGGUAUCGggGuCCGGcGCggucgGUGUc -3'
miRNA:   3'- -CACU--CCCGUAGCuuU-GGCC-CGa----CACG- -5'
23235 5' -55.6 NC_005259.1 + 18842 0.69 0.537932
Target:  5'- gGUGAGGGUcUC---GCCGGuGCcGUGCa -3'
miRNA:   3'- -CACUCCCGuAGcuuUGGCC-CGaCACG- -5'
23235 5' -55.6 NC_005259.1 + 18127 0.7 0.500526
Target:  5'- -cGAGGGCAacaUCGGcaaggccauggacgaGAUCGGGCUGacGCc -3'
miRNA:   3'- caCUCCCGU---AGCU---------------UUGGCCCGACa-CG- -5'
23235 5' -55.6 NC_005259.1 + 32514 0.71 0.476237
Target:  5'- cGUGAGGuaGUCGAGG-CGGGCg--GCa -3'
miRNA:   3'- -CACUCCcgUAGCUUUgGCCCGacaCG- -5'
23235 5' -55.6 NC_005259.1 + 48189 0.66 0.771936
Target:  5'- ---cGGGUGUCG-GACCGGGCa-UGCc -3'
miRNA:   3'- cacuCCCGUAGCuUUGGCCCGacACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.