miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 3' -56.1 NC_005259.1 + 63727 0.68 0.626538
Target:  5'- --cCUGCgcaGCCGGUAgCGACAuCUCGGc -3'
miRNA:   3'- cuaGACG---UGGUCGUgGCUGUcGAGCC- -5'
23236 3' -56.1 NC_005259.1 + 63697 0.7 0.479432
Target:  5'- gGAUCUGCGCCuGC-CCaGCGGggaUCGGg -3'
miRNA:   3'- -CUAGACGUGGuCGuGGcUGUCg--AGCC- -5'
23236 3' -56.1 NC_005259.1 + 61994 0.68 0.594184
Target:  5'- -cUCUGCACCaugGGCACCGuGCGguguacccGCUCGc -3'
miRNA:   3'- cuAGACGUGG---UCGUGGC-UGU--------CGAGCc -5'
23236 3' -56.1 NC_005259.1 + 60947 0.72 0.385324
Target:  5'- cGUCUGCACCAcaugcGCGuCCGGCGGCagaUCGa -3'
miRNA:   3'- cUAGACGUGGU-----CGU-GGCUGUCG---AGCc -5'
23236 3' -56.1 NC_005259.1 + 60554 0.68 0.626538
Target:  5'- cGUCgGCAugcCCGGUGCCGACGGUcaggCGGc -3'
miRNA:   3'- cUAGaCGU---GGUCGUGGCUGUCGa---GCC- -5'
23236 3' -56.1 NC_005259.1 + 58952 0.66 0.701743
Target:  5'- cGUCgGCcuugGCCAGCAgguCgGGCAGCUCGu -3'
miRNA:   3'- cUAGaCG----UGGUCGU---GgCUGUCGAGCc -5'
23236 3' -56.1 NC_005259.1 + 58734 0.82 0.08476
Target:  5'- uGUCguugGCACCGGCACCGGCgaAGUUCGGc -3'
miRNA:   3'- cUAGa---CGUGGUCGUGGCUG--UCGAGCC- -5'
23236 3' -56.1 NC_005259.1 + 58398 0.71 0.453832
Target:  5'- ----cGCACCAGcCACCGGCGGCgaucagagauccacCGGg -3'
miRNA:   3'- cuagaCGUGGUC-GUGGCUGUCGa-------------GCC- -5'
23236 3' -56.1 NC_005259.1 + 57357 0.66 0.722797
Target:  5'- aGAUgaGagaACgGGCACCGugGGCagucUCGGg -3'
miRNA:   3'- -CUAgaCg--UGgUCGUGGCugUCG----AGCC- -5'
23236 3' -56.1 NC_005259.1 + 56992 0.68 0.604949
Target:  5'- gGAUCUGagcuGCCcgugcgAGCACCucagcGCGGCUCGGc -3'
miRNA:   3'- -CUAGACg---UGG------UCGUGGc----UGUCGAGCC- -5'
23236 3' -56.1 NC_005259.1 + 52593 0.68 0.615737
Target:  5'- cGUCgccgaGCACCAGCGCCGuACGGUggccaacuacgUCGa -3'
miRNA:   3'- cUAGa----CGUGGUCGUGGC-UGUCG-----------AGCc -5'
23236 3' -56.1 NC_005259.1 + 50412 0.72 0.394177
Target:  5'- ----cGCGCCGGUGCCuuGAcCGGCUCGGg -3'
miRNA:   3'- cuagaCGUGGUCGUGG--CU-GUCGAGCC- -5'
23236 3' -56.1 NC_005259.1 + 46756 0.72 0.359565
Target:  5'- --gCUGCGCCGacaccuGCGCCGACAGC-CGc -3'
miRNA:   3'- cuaGACGUGGU------CGUGGCUGUCGaGCc -5'
23236 3' -56.1 NC_005259.1 + 45591 1.09 0.000989
Target:  5'- gGAUCUGCACCAGCACCGACAGCUCGGu -3'
miRNA:   3'- -CUAGACGUGGUCGUGGCUGUCGAGCC- -5'
23236 3' -56.1 NC_005259.1 + 44716 0.67 0.637345
Target:  5'- cGAUCUGCAac-GCAcCCGGCAGCgCGc -3'
miRNA:   3'- -CUAGACGUgguCGU-GGCUGUCGaGCc -5'
23236 3' -56.1 NC_005259.1 + 42537 0.68 0.626538
Target:  5'- cGAUggGCACCgaGGUgGCgGGCAGCUCGGc -3'
miRNA:   3'- -CUAgaCGUGG--UCG-UGgCUGUCGAGCC- -5'
23236 3' -56.1 NC_005259.1 + 40157 0.71 0.412274
Target:  5'- uGUCgGUGCCcGCcCCGGCAGCUCGa -3'
miRNA:   3'- cUAGaCGUGGuCGuGGCUGUCGAGCc -5'
23236 3' -56.1 NC_005259.1 + 36862 0.67 0.695372
Target:  5'- --gCUGCGCCGuugcuggcaccgcccGCGCCGACGacGC-CGGu -3'
miRNA:   3'- cuaGACGUGGU---------------CGUGGCUGU--CGaGCC- -5'
23236 3' -56.1 NC_005259.1 + 35447 0.68 0.604949
Target:  5'- uAUCUGUccgcgcccACCGGCACCGcCAGCaccgccCGGu -3'
miRNA:   3'- cUAGACG--------UGGUCGUGGCuGUCGa-----GCC- -5'
23236 3' -56.1 NC_005259.1 + 33612 0.67 0.657856
Target:  5'- cGAgCUGCAaCCGGcCACCGAaacuguugcgaauCGcGCUCGGg -3'
miRNA:   3'- -CUaGACGU-GGUC-GUGGCU-------------GU-CGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.