miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23238 3' -64.2 NC_005259.1 + 35868 0.71 0.154686
Target:  5'- cCGCGUCCacCGcaGCCGcCGCCGAGGCa- -3'
miRNA:   3'- cGCGCGGGa-GC--UGGC-GCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 36439 0.75 0.082801
Target:  5'- aGCGuCGCCgaggUCGACCGCGUCGAGGgUg -3'
miRNA:   3'- -CGC-GCGGg---AGCUGGCGCGGCUCCgAg -5'
23238 3' -64.2 NC_005259.1 + 36512 0.66 0.334889
Target:  5'- gGCGUGUCCUUGAaccacCCGCGCggugugacacgCGGGGUg- -3'
miRNA:   3'- -CGCGCGGGAGCU-----GGCGCG-----------GCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 36613 0.68 0.278724
Target:  5'- aCGCGaCCCUUGccgcCCGCGCCGcccgcaAGGCcCg -3'
miRNA:   3'- cGCGC-GGGAGCu---GGCGCGGC------UCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 36662 0.77 0.061738
Target:  5'- cGC-CGCCCUCGccGCCGcCGCCGGGGuCUUg -3'
miRNA:   3'- -CGcGCGGGAGC--UGGC-GCGGCUCC-GAG- -5'
23238 3' -64.2 NC_005259.1 + 37198 0.72 0.13611
Target:  5'- uGCG-GCCCUUGccgccaccgccGCCGcCGCCGGGGCg- -3'
miRNA:   3'- -CGCgCGGGAGC-----------UGGC-GCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 37372 0.67 0.312902
Target:  5'- aGCucaCGCCCUCGgcaccgcccGCCGCGCCGcccauGGUg- -3'
miRNA:   3'- -CGc--GCGGGAGC---------UGGCGCGGCu----CCGag -5'
23238 3' -64.2 NC_005259.1 + 38817 0.66 0.350164
Target:  5'- cCGCGCCCgcgaUGACCGaGUCGAuGGCc- -3'
miRNA:   3'- cGCGCGGGa---GCUGGCgCGGCU-CCGag -5'
23238 3' -64.2 NC_005259.1 + 38852 0.67 0.30582
Target:  5'- aGCGCGUUCUCGAUguucgaCGCGCCcgcaauGGCg- -3'
miRNA:   3'- -CGCGCGGGAGCUG------GCGCGGcu----CCGag -5'
23238 3' -64.2 NC_005259.1 + 39326 0.67 0.315769
Target:  5'- uCGCGCCgcuggugaccgucaaCUCGACCacgacGUGCCGGGcCUCg -3'
miRNA:   3'- cGCGCGG---------------GAGCUGG-----CGCGGCUCcGAG- -5'
23238 3' -64.2 NC_005259.1 + 39905 0.67 0.30582
Target:  5'- cGC-CGCCCgccUCGauccgucgaggGCCGCGUCGAGGUcgUCc -3'
miRNA:   3'- -CGcGCGGG---AGC-----------UGGCGCGGCUCCG--AG- -5'
23238 3' -64.2 NC_005259.1 + 40348 0.71 0.150412
Target:  5'- uCGCG-CCUCGAugaugaaCCGCGCCGAGgGCa- -3'
miRNA:   3'- cGCGCgGGAGCU-------GGCGCGGCUC-CGag -5'
23238 3' -64.2 NC_005259.1 + 40560 0.71 0.162741
Target:  5'- cGCGCGCCCgcgCGGugUUGCuGUCGGcGGCUCg -3'
miRNA:   3'- -CGCGCGGGa--GCU--GGCG-CGGCU-CCGAG- -5'
23238 3' -64.2 NC_005259.1 + 40625 0.68 0.265909
Target:  5'- uCGCGCacgaaCUCGauGCCGuCGCCGAGaaagucauGCUCg -3'
miRNA:   3'- cGCGCGg----GAGC--UGGC-GCGGCUC--------CGAG- -5'
23238 3' -64.2 NC_005259.1 + 42197 0.7 0.179988
Target:  5'- uGCGCGCCgUCGcgauggaugcccGCCGCGCCGccguccccGGC-Ca -3'
miRNA:   3'- -CGCGCGGgAGC------------UGGCGCGGCu-------CCGaG- -5'
23238 3' -64.2 NC_005259.1 + 44346 0.66 0.342465
Target:  5'- cCGgGCUUguuccaCGGCuCGuUGCCGAGGCUCg -3'
miRNA:   3'- cGCgCGGGa-----GCUG-GC-GCGGCUCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 44736 1.1 0.000179
Target:  5'- aGCGCGCCCUCGACCGCGCCGAGGCUCu -3'
miRNA:   3'- -CGCGCGGGAGCUGGCGCGGCUCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 44887 0.67 0.312188
Target:  5'- aCGCGCCCcaCGAguauuuuCCGCGCUGuGGGC-Cg -3'
miRNA:   3'- cGCGCGGGa-GCU-------GGCGCGGC-UCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 45162 0.75 0.0848
Target:  5'- gGC-CGCCCUUGGCCuuguugcGCGCCGAGGUc- -3'
miRNA:   3'- -CGcGCGGGAGCUGG-------CGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 45410 0.69 0.235961
Target:  5'- aGCGCGCUgaUGGCCGcCGCCGcuGcCUCg -3'
miRNA:   3'- -CGCGCGGgaGCUGGC-GCGGCucC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.