miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 43859 0.68 0.558649
Target:  5'- cGAGCGCacccgugacgacaccGGCagCGUUGCCGCCGAc- -3'
miRNA:   3'- cCUUGCGc--------------UCGg-GCAACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 47818 0.68 0.557608
Target:  5'- aGAccuCGCGGGCcaCCGcUGCCGCUGAc- -3'
miRNA:   3'- cCUu--GCGCUCG--GGCaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 59134 0.68 0.557608
Target:  5'- aGAGCGuCGAGCUCGgcagcggUGCCGggGAGCu -3'
miRNA:   3'- cCUUGC-GCUCGGGCa------ACGGCggCUUG- -5'
23240 3' -57.5 NC_005259.1 + 20296 0.68 0.557608
Target:  5'- ---cCGCGAGUUCug-GUCGCCGAGCu -3'
miRNA:   3'- ccuuGCGCUCGGGcaaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 67166 0.68 0.547223
Target:  5'- uGGugGCG-GCCa--UGCCGCCGAu- -3'
miRNA:   3'- cCUugCGCuCGGgcaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 35491 0.68 0.547223
Target:  5'- cGAACGauccuGGGuuggcCCCGUUGCCGCCGc-- -3'
miRNA:   3'- cCUUGCg----CUC-----GGGCAACGGCGGCuug -5'
23240 3' -57.5 NC_005259.1 + 5427 0.68 0.535871
Target:  5'- --cACGuCGAggucugcGCCCGcUGCCGCCGAc- -3'
miRNA:   3'- ccuUGC-GCU-------CGGGCaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 56406 0.68 0.526645
Target:  5'- cGAugGU--GCCCGgc-CCGCCGAGCu -3'
miRNA:   3'- cCUugCGcuCGGGCaacGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 26493 0.68 0.526645
Target:  5'- cGGAAcgcCGCGAGCUC---GCCGCCcGGCg -3'
miRNA:   3'- -CCUU---GCGCUCGGGcaaCGGCGGcUUG- -5'
23240 3' -57.5 NC_005259.1 + 37193 0.68 0.526645
Target:  5'- cGAGCuGCG-GCCC-UUGCCGCCa--- -3'
miRNA:   3'- cCUUG-CGCuCGGGcAACGGCGGcuug -5'
23240 3' -57.5 NC_005259.1 + 48603 0.69 0.505359
Target:  5'- cGAGCGCGGGCgcuaccgCCGUgcgcacUGCCucGCCGAGa -3'
miRNA:   3'- cCUUGCGCUCG-------GGCA------ACGG--CGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 63126 0.69 0.516465
Target:  5'- aGGGugGUGAGgUCGUaGCCGCUGucCu -3'
miRNA:   3'- -CCUugCGCUCgGGCAaCGGCGGCuuG- -5'
23240 3' -57.5 NC_005259.1 + 22044 0.69 0.476595
Target:  5'- aGAAcCGCGAGCCCGUccucaugGUCGCUcaccgugguGAGCu -3'
miRNA:   3'- cCUU-GCGCUCGGGCAa------CGGCGG---------CUUG- -5'
23240 3' -57.5 NC_005259.1 + 27722 0.69 0.476595
Target:  5'- uGGAACGCGuacuuguucgcGCCCGcUGCUGCCc--- -3'
miRNA:   3'- -CCUUGCGCu----------CGGGCaACGGCGGcuug -5'
23240 3' -57.5 NC_005259.1 + 26128 0.69 0.49635
Target:  5'- cGGu-CGCcGGUCCGacGCCGCCGAGg -3'
miRNA:   3'- -CCuuGCGcUCGGGCaaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 36954 0.69 0.476595
Target:  5'- gGGGugccCGCGAgaccgccucgGCCCGca-CCGCCGAACg -3'
miRNA:   3'- -CCUu---GCGCU----------CGGGCaacGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 45543 0.69 0.49635
Target:  5'- ---cUGCGAGCggGUUGCuCGCCGGGCc -3'
miRNA:   3'- ccuuGCGCUCGggCAACG-GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 66039 0.69 0.49635
Target:  5'- --cGCGCGAGCUCGacguagacGCCGCCGugGGCc -3'
miRNA:   3'- ccuUGCGCUCGGGCaa------CGGCGGC--UUG- -5'
23240 3' -57.5 NC_005259.1 + 45309 0.7 0.44772
Target:  5'- cGGuGACGcCGAGgCC---GCCGCCGAACu -3'
miRNA:   3'- -CC-UUGC-GCUCgGGcaaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 11434 0.7 0.438312
Target:  5'- gGGGAUGCuuGGGCCgcuCGcUGCCGCCGGu- -3'
miRNA:   3'- -CCUUGCG--CUCGG---GCaACGGCGGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.