Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23240 | 3' | -57.5 | NC_005259.1 | + | 17747 | 0.73 | 0.312101 |
Target: 5'- -cGACGCGA-UCCGUgagGCCGCCGcGCg -3' miRNA: 3'- ccUUGCGCUcGGGCAa--CGGCGGCuUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 16407 | 0.73 | 0.312101 |
Target: 5'- gGGGACGC-AGCCCaccgaggUGcCCGUCGAGCg -3' miRNA: 3'- -CCUUGCGcUCGGGca-----AC-GGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 25436 | 0.73 | 0.28346 |
Target: 5'- aGGAAUGCGAGCCguaUGagGUCGgCGAGCg -3' miRNA: 3'- -CCUUGCGCUCGG---GCaaCGGCgGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 11322 | 0.75 | 0.226683 |
Target: 5'- cGGGCGCGcAGCUCGUcgucggucaUGCCGuuGAGCc -3' miRNA: 3'- cCUUGCGC-UCGGGCA---------ACGGCggCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 41467 | 0.75 | 0.226683 |
Target: 5'- aGAA-GCG-GCCCGUgacGCCGUCGAGCa -3' miRNA: 3'- cCUUgCGCuCGGGCAa--CGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 43730 | 0.76 | 0.2047 |
Target: 5'- cGAugGCG-GCCa--UGCCGCCGAGCc -3' miRNA: 3'- cCUugCGCuCGGgcaACGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 24667 | 0.76 | 0.203128 |
Target: 5'- cGAGCGCGA-CCCGUUcGCCauccucgugcacguGCCGAGCg -3' miRNA: 3'- cCUUGCGCUcGGGCAA-CGG--------------CGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 37228 | 0.8 | 0.108248 |
Target: 5'- cGGGGCGCuGGCCCGUgccggauuggcUGCCGCCGuuGCc -3' miRNA: 3'- -CCUUGCGcUCGGGCA-----------ACGGCGGCu-UG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 26377 | 0.83 | 0.067736 |
Target: 5'- cGGugGCGAGCCUGUUGCucgcgauuccgaCGCCGGGCg -3' miRNA: 3'- cCUugCGCUCGGGCAACG------------GCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 43075 | 1.12 | 0.000534 |
Target: 5'- aGGAACGCGAGCCCGUUGCCGCCGAACa -3' miRNA: 3'- -CCUUGCGCUCGGGCAACGGCGGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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