Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23240 | 3' | -57.5 | NC_005259.1 | + | 16148 | 0.66 | 0.646306 |
Target: 5'- --cACGaCGAGguugugguguccacuCCCGUgGCCGCCGAGg -3' miRNA: 3'- ccuUGC-GCUC---------------GGGCAaCGGCGGCUUg -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 41311 | 0.66 | 0.646306 |
Target: 5'- uGAGCGCGAGgUcgaccucgaaaagggCGgUGCCGUCGGAUa -3' miRNA: 3'- cCUUGCGCUCgG---------------GCaACGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 34228 | 0.66 | 0.65267 |
Target: 5'- -cGGCGCu-GCCgGUcuUGCCGuuGAACg -3' miRNA: 3'- ccUUGCGcuCGGgCA--ACGGCggCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 46677 | 0.66 | 0.65267 |
Target: 5'- ----gGCGAGCUCGgccugaGCCGCCGccGCg -3' miRNA: 3'- ccuugCGCUCGGGCaa----CGGCGGCu-UG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 8665 | 0.66 | 0.65267 |
Target: 5'- cGGGcugccACGCGGGCaaCGggGCCGCCu--- -3' miRNA: 3'- -CCU-----UGCGCUCGg-GCaaCGGCGGcuug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 18475 | 0.66 | 0.65267 |
Target: 5'- uGAGC-CGuGCCCGacGCCGaCGAGCu -3' miRNA: 3'- cCUUGcGCuCGGGCaaCGGCgGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 19692 | 0.66 | 0.65267 |
Target: 5'- cGGGAU-CGAGCaggcucgcaCGUuggcUGCCGCCGAGg -3' miRNA: 3'- -CCUUGcGCUCGg--------GCA----ACGGCGGCUUg -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 45093 | 0.66 | 0.65267 |
Target: 5'- cGAGCGU--GCCCGUguaGCCgGUCGGGCc -3' miRNA: 3'- cCUUGCGcuCGGGCAa--CGG-CGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 17065 | 0.66 | 0.663261 |
Target: 5'- cGGuGCGCGcauuuGUgCGUcagGCCGCCGAu- -3' miRNA: 3'- -CCuUGCGCu----CGgGCAa--CGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 11950 | 0.66 | 0.642061 |
Target: 5'- ---uCGCGcAGCCCGgcgaGCaCGUCGAACc -3' miRNA: 3'- ccuuGCGC-UCGGGCaa--CG-GCGGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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