Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23240 | 3' | -57.5 | NC_005259.1 | + | 37193 | 0.68 | 0.526645 |
Target: 5'- cGAGCuGCG-GCCC-UUGCCGCCa--- -3' miRNA: 3'- cCUUG-CGCuCGGGcAACGGCGGcuug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 26493 | 0.68 | 0.526645 |
Target: 5'- cGGAAcgcCGCGAGCUC---GCCGCCcGGCg -3' miRNA: 3'- -CCUU---GCGCUCGGGcaaCGGCGGcUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 56406 | 0.68 | 0.526645 |
Target: 5'- cGAugGU--GCCCGgc-CCGCCGAGCu -3' miRNA: 3'- cCUugCGcuCGGGCaacGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 5427 | 0.68 | 0.535871 |
Target: 5'- --cACGuCGAggucugcGCCCGcUGCCGCCGAc- -3' miRNA: 3'- ccuUGC-GCU-------CGGGCaACGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 67166 | 0.68 | 0.547223 |
Target: 5'- uGGugGCG-GCCa--UGCCGCCGAu- -3' miRNA: 3'- cCUugCGCuCGGgcaACGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 35491 | 0.68 | 0.547223 |
Target: 5'- cGAACGauccuGGGuuggcCCCGUUGCCGCCGc-- -3' miRNA: 3'- cCUUGCg----CUC-----GGGCAACGGCGGCuug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 38933 | 0.68 | 0.557608 |
Target: 5'- cGGuguUGCuGuGCCCGgugccgcUGCCGCCGAGa -3' miRNA: 3'- -CCuu-GCG-CuCGGGCa------ACGGCGGCUUg -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 20296 | 0.68 | 0.557608 |
Target: 5'- ---cCGCGAGUUCug-GUCGCCGAGCu -3' miRNA: 3'- ccuuGCGCUCGGGcaaCGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 59134 | 0.68 | 0.557608 |
Target: 5'- aGAGCGuCGAGCUCGgcagcggUGCCGggGAGCu -3' miRNA: 3'- cCUUGC-GCUCGGGCa------ACGGCggCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 47818 | 0.68 | 0.557608 |
Target: 5'- aGAccuCGCGGGCcaCCGcUGCCGCUGAc- -3' miRNA: 3'- cCUu--GCGCUCG--GGCaACGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 43859 | 0.68 | 0.558649 |
Target: 5'- cGAGCGCacccgugacgacaccGGCagCGUUGCCGCCGAc- -3' miRNA: 3'- cCUUGCGc--------------UCGg-GCAACGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 61255 | 0.67 | 0.589067 |
Target: 5'- cGggUGCGAGCaugcgaCCGUcgcuggucucgaUGCCGaCGAACg -3' miRNA: 3'- cCuuGCGCUCG------GGCA------------ACGGCgGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 29061 | 0.67 | 0.589067 |
Target: 5'- cGAGCGCGguaucGGCCCGaucugcgcUGCCaagGCCGggUg -3' miRNA: 3'- cCUUGCGC-----UCGGGCa-------ACGG---CGGCuuG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 26443 | 0.67 | 0.589067 |
Target: 5'- cGAGCggGCGGGCCgGUggGCCGauguggaaCGAGCa -3' miRNA: 3'- cCUUG--CGCUCGGgCAa-CGGCg-------GCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 1810 | 0.67 | 0.594346 |
Target: 5'- uGGccGACGCGAGCaaucccgCCGaccugcucgccgcUGCCGCCGAGg -3' miRNA: 3'- -CC--UUGCGCUCG-------GGCa------------ACGGCGGCUUg -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 31403 | 0.67 | 0.599631 |
Target: 5'- cGGAGCacaGCGc-CCCGaggucGCCGCUGAGCa -3' miRNA: 3'- -CCUUG---CGCucGGGCaa---CGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 36120 | 0.67 | 0.610221 |
Target: 5'- uGAGCGUaAGCa-GUuggGCCGCCGGGCu -3' miRNA: 3'- cCUUGCGcUCGggCAa--CGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 43202 | 0.67 | 0.610221 |
Target: 5'- cGGcGAUGuCGAcGCCCGccUGacCCGCCGAGCu -3' miRNA: 3'- -CC-UUGC-GCU-CGGGCa-AC--GGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 45636 | 0.67 | 0.620828 |
Target: 5'- cGGGCaGCGcGCCgG-UGCCGCCguGAACa -3' miRNA: 3'- cCUUG-CGCuCGGgCaACGGCGG--CUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 8425 | 0.67 | 0.620828 |
Target: 5'- cGAGCauGCGAuGCUCGUUGCCGgUGGu- -3' miRNA: 3'- cCUUG--CGCU-CGGGCAACGGCgGCUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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