Results 61 - 80 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23240 | 3' | -57.5 | NC_005259.1 | + | 43797 | 0.7 | 0.429018 |
Target: 5'- -cAGCGCGGGCaCCGaguccUUGCCgggcguaccGCCGGACa -3' miRNA: 3'- ccUUGCGCUCG-GGC-----AACGG---------CGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 43859 | 0.68 | 0.558649 |
Target: 5'- cGAGCGCacccgugacgacaccGGCagCGUUGCCGCCGAc- -3' miRNA: 3'- cCUUGCGc--------------UCGg-GCAACGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 44320 | 0.71 | 0.367376 |
Target: 5'- cGAGCGUGuugagcGCCgCGUaGCUGCCGGGCu -3' miRNA: 3'- cCUUGCGCu-----CGG-GCAaCGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 44971 | 0.66 | 0.694834 |
Target: 5'- cGGGAUGCcgaGGGCCgGUgcgaCUGCCGAGg -3' miRNA: 3'- -CCUUGCG---CUCGGgCAac--GGCGGCUUg -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 45093 | 0.66 | 0.65267 |
Target: 5'- cGAGCGU--GCCCGUguaGCCgGUCGGGCc -3' miRNA: 3'- cCUUGCGcuCGGGCAa--CGG-CGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 45309 | 0.7 | 0.44772 |
Target: 5'- cGGuGACGcCGAGgCC---GCCGCCGAACu -3' miRNA: 3'- -CC-UUGC-GCUCgGGcaaCGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 45543 | 0.69 | 0.49635 |
Target: 5'- ---cUGCGAGCggGUUGCuCGCCGGGCc -3' miRNA: 3'- ccuuGCGCUCGggCAACG-GCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 45636 | 0.67 | 0.620828 |
Target: 5'- cGGGCaGCGcGCCgG-UGCCGCCguGAACa -3' miRNA: 3'- cCUUG-CGCuCGGgCaACGGCGG--CUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 46148 | 0.66 | 0.642061 |
Target: 5'- -uAGCGaCGAGCaugucgaauaCCGcUUGcCCGCCGGGCg -3' miRNA: 3'- ccUUGC-GCUCG----------GGC-AAC-GGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 46677 | 0.66 | 0.65267 |
Target: 5'- ----gGCGAGCUCGgccugaGCCGCCGccGCg -3' miRNA: 3'- ccuugCGCUCGGGCaa----CGGCGGCu-UG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 46901 | 0.7 | 0.438312 |
Target: 5'- uGAGCGCccgccGAGCaguccgCGUgcGCCGCCGAGCu -3' miRNA: 3'- cCUUGCG-----CUCGg-----GCAa-CGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 47046 | 0.66 | 0.66749 |
Target: 5'- gGGAucuGCGCGAGCgUGUUGgugagcgaggcgagCGCCGAGa -3' miRNA: 3'- -CCU---UGCGCUCGgGCAACg-------------GCGGCUUg -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 47818 | 0.68 | 0.557608 |
Target: 5'- aGAccuCGCGGGCcaCCGcUGCCGCUGAc- -3' miRNA: 3'- cCUu--GCGCUCG--GGCaACGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 48378 | 0.71 | 0.367376 |
Target: 5'- -cGACGCGucuGUugUCGUUGCCGCCGAc- -3' miRNA: 3'- ccUUGCGCu--CG--GGCAACGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 48603 | 0.69 | 0.505359 |
Target: 5'- cGAGCGCGGGCgcuaccgCCGUgcgcacUGCCucGCCGAGa -3' miRNA: 3'- cCUUGCGCUCG-------GGCA------ACGG--CGGCUUg -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 50237 | 0.66 | 0.642061 |
Target: 5'- cGAGCGCGGGCgCGgaucgugGCCaaCGGGCu -3' miRNA: 3'- cCUUGCGCUCGgGCaa-----CGGcgGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 50443 | 0.7 | 0.419842 |
Target: 5'- ---gUGCGGGCUCGggGUCGCCGGu- -3' miRNA: 3'- ccuuGCGCUCGGGCaaCGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 51418 | 0.66 | 0.69901 |
Target: 5'- aGGGGCcgguugaggucuuggGCGGGCCaCGggGCCucgcGCCGAu- -3' miRNA: 3'- -CCUUG---------------CGCUCGG-GCaaCGG----CGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 52552 | 0.72 | 0.327226 |
Target: 5'- uGGAuguGCGAGCCCGacaugGUCGaCCGGACc -3' miRNA: 3'- -CCUug-CGCUCGGGCaa---CGGC-GGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 53731 | 0.71 | 0.391294 |
Target: 5'- uGAugGUGAugucGCCgGguguccacucggUGCCGCCGAACa -3' miRNA: 3'- cCUugCGCU----CGGgCa-----------ACGGCGGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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