Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23240 | 3' | -57.5 | NC_005259.1 | + | 55105 | 0.66 | 0.684352 |
Target: 5'- cGAugGCGGcgaaaaauGCaCCGgcUGCCguGCCGAGCa -3' miRNA: 3'- cCUugCGCU--------CG-GGCa-ACGG--CGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 56406 | 0.68 | 0.526645 |
Target: 5'- cGAugGU--GCCCGgc-CCGCCGAGCu -3' miRNA: 3'- cCUugCGcuCGGGCaacGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 58577 | 0.66 | 0.663261 |
Target: 5'- cGGAuCGCG-GCgCG--GCUGCCGGGCc -3' miRNA: 3'- -CCUuGCGCuCGgGCaaCGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 59134 | 0.68 | 0.557608 |
Target: 5'- aGAGCGuCGAGCUCGgcagcggUGCCGggGAGCu -3' miRNA: 3'- cCUUGC-GCUCGGGCa------ACGGCggCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 59860 | 0.72 | 0.342887 |
Target: 5'- gGGAucAUGCuGGCUCGUUGUgGCCGAAa -3' miRNA: 3'- -CCU--UGCGcUCGGGCAACGgCGGCUUg -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 61255 | 0.67 | 0.589067 |
Target: 5'- cGggUGCGAGCaugcgaCCGUcgcuggucucgaUGCCGaCGAACg -3' miRNA: 3'- cCuuGCGCUCG------GGCA------------ACGGCgGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 62932 | 0.7 | 0.419842 |
Target: 5'- cGGuuUGCG-GCUCGcgcUGCUGCCGGGCa -3' miRNA: 3'- -CCuuGCGCuCGGGCa--ACGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 63126 | 0.69 | 0.516465 |
Target: 5'- aGGGugGUGAGgUCGUaGCCGCUGucCu -3' miRNA: 3'- -CCUugCGCUCgGGCAaCGGCGGCuuG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 66039 | 0.69 | 0.49635 |
Target: 5'- --cGCGCGAGCUCGacguagacGCCGCCGugGGCc -3' miRNA: 3'- ccuUGCGCUCGGGCaa------CGGCGGC--UUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 67166 | 0.68 | 0.547223 |
Target: 5'- uGGugGCG-GCCa--UGCCGCCGAu- -3' miRNA: 3'- cCUugCGCuCGGgcaACGGCGGCUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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