miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 25436 0.73 0.28346
Target:  5'- aGGAAUGCGAGCCguaUGagGUCGgCGAGCg -3'
miRNA:   3'- -CCUUGCGCUCGG---GCaaCGGCgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 24667 0.76 0.203128
Target:  5'- cGAGCGCGA-CCCGUUcGCCauccucgugcacguGCCGAGCg -3'
miRNA:   3'- cCUUGCGCUcGGGCAA-CGG--------------CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 23877 0.66 0.663261
Target:  5'- uGGAUGCGcuaUCCGcUGCCGcCCGAGCc -3'
miRNA:   3'- cCUUGCGCuc-GGGCaACGGC-GGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 23286 0.7 0.451515
Target:  5'- cGGGCGCGgugguuggguaucggGGUCCGgcgcggucggUGUCGCCGAGCc -3'
miRNA:   3'- cCUUGCGC---------------UCGGGCa---------ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 22044 0.69 0.476595
Target:  5'- aGAAcCGCGAGCCCGUccucaugGUCGCUcaccgugguGAGCu -3'
miRNA:   3'- cCUU-GCGCUCGGGCAa------CGGCGG---------CUUG- -5'
23240 3' -57.5 NC_005259.1 + 21454 0.67 0.631444
Target:  5'- aGAACGCu-GCCCGUgagGCUuugaaGCCGAuccGCg -3'
miRNA:   3'- cCUUGCGcuCGGGCAa--CGG-----CGGCU---UG- -5'
23240 3' -57.5 NC_005259.1 + 21190 0.66 0.673825
Target:  5'- -cGGCGCGAGCaCCaagcUGCaagguGCCGAGCu -3'
miRNA:   3'- ccUUGCGCUCG-GGca--ACGg----CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 20296 0.68 0.557608
Target:  5'- ---cCGCGAGUUCug-GUCGCCGAGCu -3'
miRNA:   3'- ccuuGCGCUCGGGcaaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 19692 0.66 0.65267
Target:  5'- cGGGAU-CGAGCaggcucgcaCGUuggcUGCCGCCGAGg -3'
miRNA:   3'- -CCUUGcGCUCGg--------GCA----ACGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 19544 0.71 0.375802
Target:  5'- aGGccGACGCGuauGCCCGcaGCCGUCGGGa -3'
miRNA:   3'- -CC--UUGCGCu--CGGGCaaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 18475 0.66 0.65267
Target:  5'- uGAGC-CGuGCCCGacGCCGaCGAGCu -3'
miRNA:   3'- cCUUGcGCuCGGGCaaCGGCgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 17747 0.73 0.312101
Target:  5'- -cGACGCGA-UCCGUgagGCCGCCGcGCg -3'
miRNA:   3'- ccUUGCGCUcGGGCAa--CGGCGGCuUG- -5'
23240 3' -57.5 NC_005259.1 + 17065 0.66 0.663261
Target:  5'- cGGuGCGCGcauuuGUgCGUcagGCCGCCGAu- -3'
miRNA:   3'- -CCuUGCGCu----CGgGCAa--CGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 16407 0.73 0.312101
Target:  5'- gGGGACGC-AGCCCaccgaggUGcCCGUCGAGCg -3'
miRNA:   3'- -CCUUGCGcUCGGGca-----AC-GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 16148 0.66 0.646306
Target:  5'- --cACGaCGAGguugugguguccacuCCCGUgGCCGCCGAGg -3'
miRNA:   3'- ccuUGC-GCUC---------------GGGCAaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 14869 0.66 0.642061
Target:  5'- aGGuuCGCGcuGCCCGagccGCCGCCGuAUg -3'
miRNA:   3'- -CCuuGCGCu-CGGGCaa--CGGCGGCuUG- -5'
23240 3' -57.5 NC_005259.1 + 14326 0.66 0.694834
Target:  5'- -cGACGCcgccGCCCGcgugcggGCCGCCGAc- -3'
miRNA:   3'- ccUUGCGcu--CGGGCaa-----CGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 11950 0.66 0.642061
Target:  5'- ---uCGCGcAGCCCGgcgaGCaCGUCGAACc -3'
miRNA:   3'- ccuuGCGC-UCGGGCaa--CG-GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 11434 0.7 0.438312
Target:  5'- gGGGAUGCuuGGGCCgcuCGcUGCCGCCGGu- -3'
miRNA:   3'- -CCUUGCG--CUCGG---GCaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 11322 0.75 0.226683
Target:  5'- cGGGCGCGcAGCUCGUcgucggucaUGCCGuuGAGCc -3'
miRNA:   3'- cCUUGCGC-UCGGGCA---------ACGGCggCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.