Results 81 - 90 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23240 | 3' | -57.5 | NC_005259.1 | + | 9503 | 0.72 | 0.338132 |
Target: 5'- aGGAACGUGcGCUCGUcgcgcgcgucgaccGCCGCCGggUc -3' miRNA: 3'- -CCUUGCGCuCGGGCAa-------------CGGCGGCuuG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 9083 | 0.7 | 0.44772 |
Target: 5'- ----aGCauaGGCCCGUUGcCCGCCGAGg -3' miRNA: 3'- ccuugCGc--UCGGGCAAC-GGCGGCUUg -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 8665 | 0.66 | 0.65267 |
Target: 5'- cGGGcugccACGCGGGCaaCGggGCCGCCu--- -3' miRNA: 3'- -CCU-----UGCGCUCGg-GCaaCGGCGGcuug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 8425 | 0.67 | 0.620828 |
Target: 5'- cGAGCauGCGAuGCUCGUUGCCGgUGGu- -3' miRNA: 3'- cCUUG--CGCU-CGGGCAACGGCgGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 6350 | 0.71 | 0.400964 |
Target: 5'- cGGGgugccguACGUGcGCaCGUUGUCGCCGGGCg -3' miRNA: 3'- -CCU-------UGCGCuCGgGCAACGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 6105 | 0.66 | 0.684352 |
Target: 5'- aGAuCGcCGAGgCCGagGCCGCCGcuACg -3' miRNA: 3'- cCUuGC-GCUCgGGCaaCGGCGGCu-UG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 6051 | 0.71 | 0.364042 |
Target: 5'- ---cCGaCGAGCUCGUgugcgcggugaucGCCGCCGAACa -3' miRNA: 3'- ccuuGC-GCUCGGGCAa------------CGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 5427 | 0.68 | 0.535871 |
Target: 5'- --cACGuCGAggucugcGCCCGcUGCCGCCGAc- -3' miRNA: 3'- ccuUGC-GCU-------CGGGCaACGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 3996 | 0.66 | 0.694834 |
Target: 5'- cGAugGCGGGCCgCGUcccCCgGuuGAGCa -3' miRNA: 3'- cCUugCGCUCGG-GCAac-GG-CggCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 1810 | 0.67 | 0.594346 |
Target: 5'- uGGccGACGCGAGCaaucccgCCGaccugcucgccgcUGCCGCCGAGg -3' miRNA: 3'- -CC--UUGCGCUCG-------GGCa------------ACGGCGGCUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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