miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 41467 0.75 0.226683
Target:  5'- aGAA-GCG-GCCCGUgacGCCGUCGAGCa -3'
miRNA:   3'- cCUUgCGCuCGGGCAa--CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43730 0.76 0.2047
Target:  5'- cGAugGCG-GCCa--UGCCGCCGAGCc -3'
miRNA:   3'- cCUugCGCuCGGgcaACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 24667 0.76 0.203128
Target:  5'- cGAGCGCGA-CCCGUUcGCCauccucgugcacguGCCGAGCg -3'
miRNA:   3'- cCUUGCGCUcGGGCAA-CGG--------------CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 37228 0.8 0.108248
Target:  5'- cGGGGCGCuGGCCCGUgccggauuggcUGCCGCCGuuGCc -3'
miRNA:   3'- -CCUUGCGcUCGGGCA-----------ACGGCGGCu-UG- -5'
23240 3' -57.5 NC_005259.1 + 26377 0.83 0.067736
Target:  5'- cGGugGCGAGCCUGUUGCucgcgauuccgaCGCCGGGCg -3'
miRNA:   3'- cCUugCGCUCGGGCAACG------------GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 6051 0.71 0.364042
Target:  5'- ---cCGaCGAGCUCGUgugcgcggugaucGCCGCCGAACa -3'
miRNA:   3'- ccuuGC-GCUCGGGCAa------------CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 44320 0.71 0.367376
Target:  5'- cGAGCGUGuugagcGCCgCGUaGCUGCCGGGCu -3'
miRNA:   3'- cCUUGCGCu-----CGG-GCAaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 11434 0.7 0.438312
Target:  5'- gGGGAUGCuuGGGCCgcuCGcUGCCGCCGGu- -3'
miRNA:   3'- -CCUUGCG--CUCGG---GCaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 46901 0.7 0.438312
Target:  5'- uGAGCGCccgccGAGCaguccgCGUgcGCCGCCGAGCu -3'
miRNA:   3'- cCUUGCG-----CUCGg-----GCAa-CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43797 0.7 0.429018
Target:  5'- -cAGCGCGGGCaCCGaguccUUGCCgggcguaccGCCGGACa -3'
miRNA:   3'- ccUUGCGCUCG-GGC-----AACGG---------CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 30697 0.7 0.429018
Target:  5'- aGGcAGCaCGAGCgugUUGUUGCCGCCGAcGCg -3'
miRNA:   3'- -CC-UUGcGCUCG---GGCAACGGCGGCU-UG- -5'
23240 3' -57.5 NC_005259.1 + 26557 0.7 0.419842
Target:  5'- --cAC-CGAGgCUGUaGCCGCCGAGCa -3'
miRNA:   3'- ccuUGcGCUCgGGCAaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 62932 0.7 0.419842
Target:  5'- cGGuuUGCG-GCUCGcgcUGCUGCCGGGCa -3'
miRNA:   3'- -CCuuGCGCuCGGGCa--ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 50443 0.7 0.419842
Target:  5'- ---gUGCGGGCUCGggGUCGCCGGu- -3'
miRNA:   3'- ccuuGCGCUCGGGCaaCGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 6350 0.71 0.400964
Target:  5'- cGGGgugccguACGUGcGCaCGUUGUCGCCGGGCg -3'
miRNA:   3'- -CCU-------UGCGCuCGgGCAACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 53731 0.71 0.391294
Target:  5'- uGAugGUGAugucGCCgGguguccacucggUGCCGCCGAACa -3'
miRNA:   3'- cCUugCGCU----CGGgCa-----------ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 40314 0.71 0.384357
Target:  5'- cGAcacuCGUGAGCUCGaaaaGCUGCCGGACa -3'
miRNA:   3'- cCUu---GCGCUCGGGCaa--CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43009 0.71 0.384357
Target:  5'- aGGGACGaGAacaaaCCGgcgaUGCCGCCGAGCa -3'
miRNA:   3'- -CCUUGCgCUcg---GGCa---ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 19544 0.71 0.375802
Target:  5'- aGGccGACGCGuauGCCCGcaGCCGUCGGGa -3'
miRNA:   3'- -CC--UUGCGCu--CGGGCaaCGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 48378 0.71 0.367376
Target:  5'- -cGACGCGucuGUugUCGUUGCCGCCGAc- -3'
miRNA:   3'- ccUUGCGCu--CG--GGCAACGGCGGCUug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.