miRNA display CGI


Results 81 - 90 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 26557 0.7 0.419842
Target:  5'- --cAC-CGAGgCUGUaGCCGCCGAGCa -3'
miRNA:   3'- ccuUGcGCUCgGGCAaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 30697 0.7 0.429018
Target:  5'- aGGcAGCaCGAGCgugUUGUUGCCGCCGAcGCg -3'
miRNA:   3'- -CC-UUGcGCUCG---GGCAACGGCGGCU-UG- -5'
23240 3' -57.5 NC_005259.1 + 43797 0.7 0.429018
Target:  5'- -cAGCGCGGGCaCCGaguccUUGCCgggcguaccGCCGGACa -3'
miRNA:   3'- ccUUGCGCUCG-GGC-----AACGG---------CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 46901 0.7 0.438312
Target:  5'- uGAGCGCccgccGAGCaguccgCGUgcGCCGCCGAGCu -3'
miRNA:   3'- cCUUGCG-----CUCGg-----GCAa-CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 11434 0.7 0.438312
Target:  5'- gGGGAUGCuuGGGCCgcuCGcUGCCGCCGGu- -3'
miRNA:   3'- -CCUUGCG--CUCGG---GCaACGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 45309 0.7 0.44772
Target:  5'- cGGuGACGcCGAGgCC---GCCGCCGAACu -3'
miRNA:   3'- -CC-UUGC-GCUCgGGcaaCGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 9083 0.7 0.44772
Target:  5'- ----aGCauaGGCCCGUUGcCCGCCGAGg -3'
miRNA:   3'- ccuugCGc--UCGGGCAAC-GGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 23286 0.7 0.451515
Target:  5'- cGGGCGCGgugguuggguaucggGGUCCGgcgcggucggUGUCGCCGAGCc -3'
miRNA:   3'- cCUUGCGC---------------UCGGGCa---------ACGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 22044 0.69 0.476595
Target:  5'- aGAAcCGCGAGCCCGUccucaugGUCGCUcaccgugguGAGCu -3'
miRNA:   3'- cCUU-GCGCUCGGGCAa------CGGCGG---------CUUG- -5'
23240 3' -57.5 NC_005259.1 + 35491 0.68 0.547223
Target:  5'- cGAACGauccuGGGuuggcCCCGUUGCCGCCGc-- -3'
miRNA:   3'- cCUUGCg----CUC-----GGGCAACGGCGGCuug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.