Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23240 | 3' | -57.5 | NC_005259.1 | + | 41467 | 0.75 | 0.226683 |
Target: 5'- aGAA-GCG-GCCCGUgacGCCGUCGAGCa -3' miRNA: 3'- cCUUgCGCuCGGGCAa--CGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 43730 | 0.76 | 0.2047 |
Target: 5'- cGAugGCG-GCCa--UGCCGCCGAGCc -3' miRNA: 3'- cCUugCGCuCGGgcaACGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 24667 | 0.76 | 0.203128 |
Target: 5'- cGAGCGCGA-CCCGUUcGCCauccucgugcacguGCCGAGCg -3' miRNA: 3'- cCUUGCGCUcGGGCAA-CGG--------------CGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 37228 | 0.8 | 0.108248 |
Target: 5'- cGGGGCGCuGGCCCGUgccggauuggcUGCCGCCGuuGCc -3' miRNA: 3'- -CCUUGCGcUCGGGCA-----------ACGGCGGCu-UG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 26377 | 0.83 | 0.067736 |
Target: 5'- cGGugGCGAGCCUGUUGCucgcgauuccgaCGCCGGGCg -3' miRNA: 3'- cCUugCGCUCGGGCAACG------------GCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 6051 | 0.71 | 0.364042 |
Target: 5'- ---cCGaCGAGCUCGUgugcgcggugaucGCCGCCGAACa -3' miRNA: 3'- ccuuGC-GCUCGGGCAa------------CGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 44320 | 0.71 | 0.367376 |
Target: 5'- cGAGCGUGuugagcGCCgCGUaGCUGCCGGGCu -3' miRNA: 3'- cCUUGCGCu-----CGG-GCAaCGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 11434 | 0.7 | 0.438312 |
Target: 5'- gGGGAUGCuuGGGCCgcuCGcUGCCGCCGGu- -3' miRNA: 3'- -CCUUGCG--CUCGG---GCaACGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 46901 | 0.7 | 0.438312 |
Target: 5'- uGAGCGCccgccGAGCaguccgCGUgcGCCGCCGAGCu -3' miRNA: 3'- cCUUGCG-----CUCGg-----GCAa-CGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 43797 | 0.7 | 0.429018 |
Target: 5'- -cAGCGCGGGCaCCGaguccUUGCCgggcguaccGCCGGACa -3' miRNA: 3'- ccUUGCGCUCG-GGC-----AACGG---------CGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 30697 | 0.7 | 0.429018 |
Target: 5'- aGGcAGCaCGAGCgugUUGUUGCCGCCGAcGCg -3' miRNA: 3'- -CC-UUGcGCUCG---GGCAACGGCGGCU-UG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 26557 | 0.7 | 0.419842 |
Target: 5'- --cAC-CGAGgCUGUaGCCGCCGAGCa -3' miRNA: 3'- ccuUGcGCUCgGGCAaCGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 62932 | 0.7 | 0.419842 |
Target: 5'- cGGuuUGCG-GCUCGcgcUGCUGCCGGGCa -3' miRNA: 3'- -CCuuGCGCuCGGGCa--ACGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 50443 | 0.7 | 0.419842 |
Target: 5'- ---gUGCGGGCUCGggGUCGCCGGu- -3' miRNA: 3'- ccuuGCGCUCGGGCaaCGGCGGCUug -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 6350 | 0.71 | 0.400964 |
Target: 5'- cGGGgugccguACGUGcGCaCGUUGUCGCCGGGCg -3' miRNA: 3'- -CCU-------UGCGCuCGgGCAACGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 53731 | 0.71 | 0.391294 |
Target: 5'- uGAugGUGAugucGCCgGguguccacucggUGCCGCCGAACa -3' miRNA: 3'- cCUugCGCU----CGGgCa-----------ACGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 40314 | 0.71 | 0.384357 |
Target: 5'- cGAcacuCGUGAGCUCGaaaaGCUGCCGGACa -3' miRNA: 3'- cCUu---GCGCUCGGGCaa--CGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 43009 | 0.71 | 0.384357 |
Target: 5'- aGGGACGaGAacaaaCCGgcgaUGCCGCCGAGCa -3' miRNA: 3'- -CCUUGCgCUcg---GGCa---ACGGCGGCUUG- -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 19544 | 0.71 | 0.375802 |
Target: 5'- aGGccGACGCGuauGCCCGcaGCCGUCGGGa -3' miRNA: 3'- -CC--UUGCGCu--CGGGCaaCGGCGGCUUg -5' |
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23240 | 3' | -57.5 | NC_005259.1 | + | 48378 | 0.71 | 0.367376 |
Target: 5'- -cGACGCGucuGUugUCGUUGCCGCCGAc- -3' miRNA: 3'- ccUUGCGCu--CG--GGCAACGGCGGCUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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