miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23241 5' -55.1 NC_005259.1 + 40128 0.66 0.756949
Target:  5'- uGGAAUuGGCgGGCGAgcucGCCGUCGGu- -3'
miRNA:   3'- -UCUUGuUUGgCCGCUa---CGGCGGCUcg -5'
23241 5' -55.1 NC_005259.1 + 41008 0.66 0.756949
Target:  5'- uGGAuCGGGCCGGUccacaguguGGUGCCGCUGu-- -3'
miRNA:   3'- -UCUuGUUUGGCCG---------CUACGGCGGCucg -5'
23241 5' -55.1 NC_005259.1 + 16407 0.66 0.756949
Target:  5'- gGGGACGcAGCCcaccgaGGUGcCCGUCGAGCg -3'
miRNA:   3'- -UCUUGU-UUGGccg---CUAC-GGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 40632 0.66 0.756949
Target:  5'- cGAACucgauGCCGuCGccgagaaagucAUGCuCGCCGAGCa -3'
miRNA:   3'- uCUUGuu---UGGCcGC-----------UACG-GCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 31070 0.66 0.756949
Target:  5'- uGAuCGggUCGGCGAgGUUcCCGAGCg -3'
miRNA:   3'- uCUuGUuuGGCCGCUaCGGcGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 44037 0.67 0.746761
Target:  5'- uGAACAccggccuugacGACCGGCucGAgugcgcUGUCGuuGAGCu -3'
miRNA:   3'- uCUUGU-----------UUGGCCG--CU------ACGGCggCUCG- -5'
23241 5' -55.1 NC_005259.1 + 42929 0.67 0.746761
Target:  5'- uGAGCAugaGGCCcucgccgugGGCGAgGCCGCCGuuGUn -3'
miRNA:   3'- uCUUGU---UUGG---------CCGCUaCGGCGGCu-CG- -5'
23241 5' -55.1 NC_005259.1 + 14513 0.67 0.736461
Target:  5'- --uGCAcACCGGCGA-GCaCGCgGuGCg -3'
miRNA:   3'- ucuUGUuUGGCCGCUaCG-GCGgCuCG- -5'
23241 5' -55.1 NC_005259.1 + 63163 0.67 0.715565
Target:  5'- uGAGC-AGCCGcCGcagcGCCGCCGAGg -3'
miRNA:   3'- uCUUGuUUGGCcGCua--CGGCGGCUCg -5'
23241 5' -55.1 NC_005259.1 + 26493 0.67 0.715565
Target:  5'- cGGAAC--GCC-GCGAgcucGCCGCCcGGCg -3'
miRNA:   3'- -UCUUGuuUGGcCGCUa---CGGCGGcUCG- -5'
23241 5' -55.1 NC_005259.1 + 14203 0.67 0.704992
Target:  5'- cGAGCAGGCCGGgaucaacuaccCGgcGCgCGUCGuGCg -3'
miRNA:   3'- uCUUGUUUGGCC-----------GCuaCG-GCGGCuCG- -5'
23241 5' -55.1 NC_005259.1 + 27996 0.67 0.704992
Target:  5'- uGGuGCGGguGCCggGGCGggGUCGCCGGGg -3'
miRNA:   3'- -UCuUGUU--UGG--CCGCuaCGGCGGCUCg -5'
23241 5' -55.1 NC_005259.1 + 57313 0.67 0.704992
Target:  5'- cGAGC--ACCGGCGGUGUCGgUGuGGUc -3'
miRNA:   3'- uCUUGuuUGGCCGCUACGGCgGC-UCG- -5'
23241 5' -55.1 NC_005259.1 + 14956 0.67 0.704992
Target:  5'- aAGGGC-GGCauggaGGCGcauucaagGCCGCCGGGUa -3'
miRNA:   3'- -UCUUGuUUGg----CCGCua------CGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 35034 0.67 0.704992
Target:  5'- uGGAAgccCGAuaGCCGGaUGAUGUCGCCGGa- -3'
miRNA:   3'- -UCUU---GUU--UGGCC-GCUACGGCGGCUcg -5'
23241 5' -55.1 NC_005259.1 + 12207 0.67 0.704992
Target:  5'- uAGAGaugcACCGGCGcaccGCCcgcugGCCGGGCa -3'
miRNA:   3'- -UCUUguu-UGGCCGCua--CGG-----CGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 19104 0.67 0.704992
Target:  5'- cGAACucACCGGCGcugguGUGUgCGUCGuGCa -3'
miRNA:   3'- uCUUGuuUGGCCGC-----UACG-GCGGCuCG- -5'
23241 5' -55.1 NC_005259.1 + 60258 0.67 0.704992
Target:  5'- gGGuGCAAgGCUGGCcaccagcGCUGCCGGGCg -3'
miRNA:   3'- -UCuUGUU-UGGCCGcua----CGGCGGCUCG- -5'
23241 5' -55.1 NC_005259.1 + 48189 0.67 0.704992
Target:  5'- cGGGuguCGGACCGG-GcAUGCCGUCGuAGUg -3'
miRNA:   3'- -UCUu--GUUUGGCCgC-UACGGCGGC-UCG- -5'
23241 5' -55.1 NC_005259.1 + 50408 0.67 0.704992
Target:  5'- cGAGCGcGCCGGUGccuUGaCCGgCuCGGGCa -3'
miRNA:   3'- uCUUGUuUGGCCGCu--AC-GGC-G-GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.