miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23242 3' -59.5 NC_005259.1 + 1546 0.71 0.287708
Target:  5'- -aUCGGGGCCGCguUCGGggcggugaCGCUGUGa -3'
miRNA:   3'- agAGCCCCGGCGguGGCUa-------GUGACAU- -5'
23242 3' -59.5 NC_005259.1 + 61251 0.66 0.542592
Target:  5'- aUCUCGGGuGCgagcaUGCgACCG-UCGCUGg- -3'
miRNA:   3'- -AGAGCCC-CG-----GCGgUGGCuAGUGACau -5'
23242 3' -59.5 NC_005259.1 + 55819 0.66 0.529252
Target:  5'- cCUCGGGGUagGCCGCCGcGUCcucgacgcguguggACUGa- -3'
miRNA:   3'- aGAGCCCCGg-CGGUGGC-UAG--------------UGACau -5'
23242 3' -59.5 NC_005259.1 + 58701 0.66 0.522119
Target:  5'- gCUCGucGCCGCCGCCG-UCACc--- -3'
miRNA:   3'- aGAGCccCGGCGGUGGCuAGUGacau -5'
23242 3' -59.5 NC_005259.1 + 60596 0.66 0.511994
Target:  5'- -gUCGGGuGCCGUCAUCGAgcagCACa--- -3'
miRNA:   3'- agAGCCC-CGGCGGUGGCUa---GUGacau -5'
23242 3' -59.5 NC_005259.1 + 67310 0.67 0.462702
Target:  5'- cCUCGGGGuuGCgCGgUGAUCcCUGg- -3'
miRNA:   3'- aGAGCCCCggCG-GUgGCUAGuGACau -5'
23242 3' -59.5 NC_005259.1 + 55893 0.68 0.398166
Target:  5'- cCUCgGGGGUCG-CGCCGGggUCGCUGg- -3'
miRNA:   3'- aGAG-CCCCGGCgGUGGCU--AGUGACau -5'
23242 3' -59.5 NC_005259.1 + 43963 0.69 0.380814
Target:  5'- --gCGGGGCCGCCgccugACCGAggGCgGUGc -3'
miRNA:   3'- agaGCCCCGGCGG-----UGGCUagUGaCAU- -5'
23242 3' -59.5 NC_005259.1 + 35633 0.7 0.324175
Target:  5'- gUUC-GGGCCGCCGCCGcugcCGCUGg- -3'
miRNA:   3'- aGAGcCCCGGCGGUGGCua--GUGACau -5'
23242 3' -59.5 NC_005259.1 + 42779 1.07 0.000693
Target:  5'- gUCUCGGGGCCGCCACCGAUCACUGUAa -3'
miRNA:   3'- -AGAGCCCCGGCGGUGGCUAGUGACAU- -5'
23242 3' -59.5 NC_005259.1 + 48536 0.71 0.274051
Target:  5'- uUCUCGGcGCUGUCGCCGGUCuugUUGUAc -3'
miRNA:   3'- -AGAGCCcCGGCGGUGGCUAGu--GACAU- -5'
23242 3' -59.5 NC_005259.1 + 4410 0.72 0.242187
Target:  5'- aCUaCGaGGGCCGCCACCGcgCGCc--- -3'
miRNA:   3'- aGA-GC-CCCGGCGGUGGCuaGUGacau -5'
23242 3' -59.5 NC_005259.1 + 13422 0.72 0.236197
Target:  5'- --cCGGGGUCGCCGCCGGggccgCGCUa-- -3'
miRNA:   3'- agaGCCCCGGCGGUGGCUa----GUGAcau -5'
23242 3' -59.5 NC_005259.1 + 56099 0.73 0.197678
Target:  5'- -gUCGGGGCCaccgcgugGCCACCGAa-ACUGUGu -3'
miRNA:   3'- agAGCCCCGG--------CGGUGGCUagUGACAU- -5'
23242 3' -59.5 NC_005259.1 + 33219 0.74 0.187725
Target:  5'- uUCUUGuuGCCGCCGCCGGUCACcgcGUAc -3'
miRNA:   3'- -AGAGCccCGGCGGUGGCUAGUGa--CAU- -5'
23242 3' -59.5 NC_005259.1 + 8683 0.74 0.169137
Target:  5'- --aCGGGGCCGCC-UCGAugUCGCUGUc -3'
miRNA:   3'- agaGCCCCGGCGGuGGCU--AGUGACAu -5'
23242 3' -59.5 NC_005259.1 + 50449 0.75 0.152213
Target:  5'- gCUCGGGGUCGCCggucucGCUGAUCACg--- -3'
miRNA:   3'- aGAGCCCCGGCGG------UGGCUAGUGacau -5'
23242 3' -59.5 NC_005259.1 + 45392 0.89 0.014173
Target:  5'- uUCUCGGGGUCGCCGCCGAgcgCGCUGa- -3'
miRNA:   3'- -AGAGCCCCGGCGGUGGCUa--GUGACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.