miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23243 3' -60 NC_005259.1 + 42412 1.04 0.000802
Target:  5'- gUACUCGAUGGCGGUGCGGCAGCCGAAa -3'
miRNA:   3'- -AUGAGCUACCGCCACGCCGUCGGCUU- -5'
23243 3' -60 NC_005259.1 + 10330 0.66 0.490113
Target:  5'- gGCUCGgcGaCGGgcucgGCGGCAGCgGGc -3'
miRNA:   3'- aUGAGCuaCcGCCa----CGCCGUCGgCUu -5'
23243 3' -60 NC_005259.1 + 61026 0.66 0.480151
Target:  5'- cACUCGGUGGCGGcGaGGUcGaCCGAc -3'
miRNA:   3'- aUGAGCUACCGCCaCgCCGuC-GGCUu -5'
23243 3' -60 NC_005259.1 + 50430 0.66 0.460531
Target:  5'- gGCUCGGgcaGCGGUGCGGgCucggggucGCCGGu -3'
miRNA:   3'- aUGAGCUac-CGCCACGCC-Gu-------CGGCUu -5'
23243 3' -60 NC_005259.1 + 49414 0.67 0.429116
Target:  5'- uUGCUCGAUgccagcgagaaaccGGCgagcgccgccuuGGU-CGGCAGCCGGAu -3'
miRNA:   3'- -AUGAGCUA--------------CCG------------CCAcGCCGUCGGCUU- -5'
23243 3' -60 NC_005259.1 + 43726 0.67 0.422616
Target:  5'- gAgUCGAUGGCGGccaUGCcGCcgAGCCGGg -3'
miRNA:   3'- aUgAGCUACCGCC---ACGcCG--UCGGCUu -5'
23243 3' -60 NC_005259.1 + 55010 0.67 0.404375
Target:  5'- gGCUCGcuUGGCGGUcGUcucggcacgGGCuGCCGAGg -3'
miRNA:   3'- aUGAGCu-ACCGCCA-CG---------CCGuCGGCUU- -5'
23243 3' -60 NC_005259.1 + 19968 0.67 0.395443
Target:  5'- gGCUC---GGCGGUGUGGguGCCc-- -3'
miRNA:   3'- aUGAGcuaCCGCCACGCCguCGGcuu -5'
23243 3' -60 NC_005259.1 + 60420 0.67 0.395443
Target:  5'- cUGCUCGggGGUGGcccacGgGGCGGCCa-- -3'
miRNA:   3'- -AUGAGCuaCCGCCa----CgCCGUCGGcuu -5'
23243 3' -60 NC_005259.1 + 27388 0.68 0.352741
Target:  5'- gAC-CGgcGGCGGUGuCGGCAGCgGc- -3'
miRNA:   3'- aUGaGCuaCCGCCAC-GCCGUCGgCuu -5'
23243 3' -60 NC_005259.1 + 42544 0.69 0.321001
Target:  5'- cACcgaGGUGGCGGgcagcucgGCGaGCAGCCGGu -3'
miRNA:   3'- aUGag-CUACCGCCa-------CGC-CGUCGGCUu -5'
23243 3' -60 NC_005259.1 + 10453 0.72 0.210112
Target:  5'- gGCUCGAcGGCGGUGUccuGcGCAGCgGGAc -3'
miRNA:   3'- aUGAGCUaCCGCCACG---C-CGUCGgCUU- -5'
23243 3' -60 NC_005259.1 + 27985 0.72 0.199491
Target:  5'- -cCUCccuugGGUGGUGCGGguGCCGGGg -3'
miRNA:   3'- auGAGcua--CCGCCACGCCguCGGCUU- -5'
23243 3' -60 NC_005259.1 + 67158 0.66 0.500171
Target:  5'- cUugUCGAUGGUGGcgGCcauGCcGCCGAu -3'
miRNA:   3'- -AugAGCUACCGCCa-CGc--CGuCGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.