Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23244 | 5' | -57.2 | NC_005259.1 | + | 42262 | 1.09 | 0.000763 |
Target: 5'- uGAGGUGGUCACGUCGAGGCCCUUGACa -3' miRNA: 3'- -CUCCACCAGUGCAGCUCCGGGAACUG- -5' |
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23244 | 5' | -57.2 | NC_005259.1 | + | 54189 | 0.71 | 0.374595 |
Target: 5'- -uGGUGGcccUCAgG-CGGcGGCCCUUGACg -3' miRNA: 3'- cuCCACC---AGUgCaGCU-CCGGGAACUG- -5' |
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23244 | 5' | -57.2 | NC_005259.1 | + | 8753 | 0.7 | 0.437721 |
Target: 5'- -----cGUCGagGUCGAGGCCCUUGGCc -3' miRNA: 3'- cuccacCAGUg-CAGCUCCGGGAACUG- -5' |
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23244 | 5' | -57.2 | NC_005259.1 | + | 68847 | 0.69 | 0.466581 |
Target: 5'- uGAGGUGGgccaUCAUGUCGAcuuGCCCgcgccgGGCg -3' miRNA: 3'- -CUCCACC----AGUGCAGCUc--CGGGaa----CUG- -5' |
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23244 | 5' | -57.2 | NC_005259.1 | + | 10621 | 0.68 | 0.547853 |
Target: 5'- -cGuGUGGgUGCGUCGAGGCCgaacagCUUGGCc -3' miRNA: 3'- cuC-CACCaGUGCAGCUCCGG------GAACUG- -5' |
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23244 | 5' | -57.2 | NC_005259.1 | + | 60343 | 0.68 | 0.558359 |
Target: 5'- aAGGcGGcgaUCAgGUCGAGGCCCUgcccGAa -3' miRNA: 3'- cUCCaCC---AGUgCAGCUCCGGGAa---CUg -5' |
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23244 | 5' | -57.2 | NC_005259.1 | + | 55896 | 0.66 | 0.654511 |
Target: 5'- cGGG-GGUCGCGcCGGGGUCgcUGGCc -3' miRNA: 3'- cUCCaCCAGUGCaGCUCCGGgaACUG- -5' |
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23244 | 5' | -57.2 | NC_005259.1 | + | 68701 | 0.66 | 0.686532 |
Target: 5'- cGAGGcGGgcagCGCGUCGGuGCCCgaGAa -3' miRNA: 3'- -CUCCaCCa---GUGCAGCUcCGGGaaCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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