miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23245 5' -55.9 NC_005259.1 + 10673 0.66 0.75431
Target:  5'- --gGAUGgUCUGCGCCgccucuuugucgccgUUGAgCAUGGa -3'
miRNA:   3'- caaCUACgGGACGCGG---------------AGCUgGUACC- -5'
23245 5' -55.9 NC_005259.1 + 64794 0.66 0.750242
Target:  5'- --cGAcugGCUgUGUGCCUCGGCCucGGc -3'
miRNA:   3'- caaCUa--CGGgACGCGGAGCUGGuaCC- -5'
23245 5' -55.9 NC_005259.1 + 26772 0.66 0.750242
Target:  5'- -aUGAUGCCgCcgGUGCCUCGgaacACCAg-- -3'
miRNA:   3'- caACUACGG-Ga-CGCGGAGC----UGGUacc -5'
23245 5' -55.9 NC_005259.1 + 18917 0.66 0.70866
Target:  5'- -cUGAUGCUCgGCGaCUCGAUCAUc- -3'
miRNA:   3'- caACUACGGGaCGCgGAGCUGGUAcc -5'
23245 5' -55.9 NC_005259.1 + 292 0.67 0.698056
Target:  5'- --cGcgGCCUcGCGCugauCUCGACCggGGg -3'
miRNA:   3'- caaCuaCGGGaCGCG----GAGCUGGuaCC- -5'
23245 5' -55.9 NC_005259.1 + 36222 0.67 0.68739
Target:  5'- --cGAUGCCgaGCaCCUUGGCCAg-- -3'
miRNA:   3'- caaCUACGGgaCGcGGAGCUGGUacc -5'
23245 5' -55.9 NC_005259.1 + 45228 0.67 0.68739
Target:  5'- --cGAUGCCCUGCaCCUUGcUCA-GGu -3'
miRNA:   3'- caaCUACGGGACGcGGAGCuGGUaCC- -5'
23245 5' -55.9 NC_005259.1 + 37414 0.67 0.644318
Target:  5'- uGUUGAcgccGCCCgccGUGCCaUUGGCCAUcGGg -3'
miRNA:   3'- -CAACUa---CGGGa--CGCGG-AGCUGGUA-CC- -5'
23245 5' -55.9 NC_005259.1 + 36955 0.67 0.644318
Target:  5'- --gGGUGCCCgcgagacCGCCUCGGCCc--- -3'
miRNA:   3'- caaCUACGGGac-----GCGGAGCUGGuacc -5'
23245 5' -55.9 NC_005259.1 + 4104 0.68 0.622676
Target:  5'- -cUGAUGCCaaaccucgGCgGCCUCGA-CGUGGc -3'
miRNA:   3'- caACUACGGga------CG-CGGAGCUgGUACC- -5'
23245 5' -55.9 NC_005259.1 + 42917 0.68 0.622676
Target:  5'- cGUUGGUGgCCUugagcaugagGC-CCUCG-CCGUGGg -3'
miRNA:   3'- -CAACUACgGGA----------CGcGGAGCuGGUACC- -5'
23245 5' -55.9 NC_005259.1 + 22918 0.68 0.622676
Target:  5'- --gGAUGCCCUcGUG-CUCGACCucgccgGGu -3'
miRNA:   3'- caaCUACGGGA-CGCgGAGCUGGua----CC- -5'
23245 5' -55.9 NC_005259.1 + 10463 0.68 0.622676
Target:  5'- --cGGUGUCCUGCGCagcgggaCGAUCuUGGg -3'
miRNA:   3'- caaCUACGGGACGCGga-----GCUGGuACC- -5'
23245 5' -55.9 NC_005259.1 + 63189 0.68 0.601068
Target:  5'- -gUGAUcgcaccccgGUCgUGCGCCUCGACCGc-- -3'
miRNA:   3'- caACUA---------CGGgACGCGGAGCUGGUacc -5'
23245 5' -55.9 NC_005259.1 + 6216 0.68 0.601068
Target:  5'- -gUGA-GCCgCcGCGCCgacaccgUGACCGUGGg -3'
miRNA:   3'- caACUaCGG-GaCGCGGa------GCUGGUACC- -5'
23245 5' -55.9 NC_005259.1 + 42213 0.68 0.590297
Target:  5'- --gGAUGCCCgccGCGCCgccgucccCGGCCAUc- -3'
miRNA:   3'- caaCUACGGGa--CGCGGa-------GCUGGUAcc -5'
23245 5' -55.9 NC_005259.1 + 44620 0.69 0.579561
Target:  5'- cGUUGccGCCguaggUUGCGCCUUGACCGg-- -3'
miRNA:   3'- -CAACuaCGG-----GACGCGGAGCUGGUacc -5'
23245 5' -55.9 NC_005259.1 + 20158 0.69 0.544472
Target:  5'- --cGGUGCCCUGgccaccgcgcccgcCGCCUCGGCUg--- -3'
miRNA:   3'- caaCUACGGGAC--------------GCGGAGCUGGuacc -5'
23245 5' -55.9 NC_005259.1 + 8139 0.75 0.266151
Target:  5'- --gGGUGCCCcGCGcCCUCGuugcucugGCCAUGGc -3'
miRNA:   3'- caaCUACGGGaCGC-GGAGC--------UGGUACC- -5'
23245 5' -55.9 NC_005259.1 + 31780 0.76 0.228471
Target:  5'- --cGAUGUgCUGCGCCUUGACCGc-- -3'
miRNA:   3'- caaCUACGgGACGCGGAGCUGGUacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.