miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23246 3' -61 NC_005259.1 + 35253 0.68 0.383608
Target:  5'- gCACUCGCguuguuCGCGCCC-GCCG-CGC-CGg -3'
miRNA:   3'- -GUGAGUG------GCGCGGGaCGGCuGCGaGU- -5'
23246 3' -61 NC_005259.1 + 16718 0.68 0.383608
Target:  5'- aGCagGUCGCGCUCUGCCucgccACGCUCAa -3'
miRNA:   3'- gUGagUGGCGCGGGACGGc----UGCGAGU- -5'
23246 3' -61 NC_005259.1 + 64012 0.68 0.366879
Target:  5'- aUAC-CACCGCGCCCgagGCgCGGCGa--- -3'
miRNA:   3'- -GUGaGUGGCGCGGGa--CG-GCUGCgagu -5'
23246 3' -61 NC_005259.1 + 6464 0.68 0.350659
Target:  5'- aGCgUCGCCgGUGCCCUGUaccCGCUCAc -3'
miRNA:   3'- gUG-AGUGG-CGCGGGACGgcuGCGAGU- -5'
23246 3' -61 NC_005259.1 + 20613 0.68 0.350659
Target:  5'- gGCgCACCGCGaCCgUGUCGAUGCg-- -3'
miRNA:   3'- gUGaGUGGCGC-GGgACGGCUGCGagu -5'
23246 3' -61 NC_005259.1 + 17762 0.68 0.350659
Target:  5'- gGC-CGCCGCGCgCCggGCCGAgCGCa-- -3'
miRNA:   3'- gUGaGUGGCGCG-GGa-CGGCU-GCGagu -5'
23246 3' -61 NC_005259.1 + 19852 0.68 0.342742
Target:  5'- gCGCUCGguguggcgcUCGCGCCCgccgggaucGCCGACGC-CGc -3'
miRNA:   3'- -GUGAGU---------GGCGCGGGa--------CGGCUGCGaGU- -5'
23246 3' -61 NC_005259.1 + 31565 0.68 0.342742
Target:  5'- cCGCUgCACCGCGCCUgaucGUCGccaucaGCUCAg -3'
miRNA:   3'- -GUGA-GUGGCGCGGGa---CGGCug----CGAGU- -5'
23246 3' -61 NC_005259.1 + 48069 0.69 0.334955
Target:  5'- gCGC-CGCCGCGCCCUGagCGAUGgUg- -3'
miRNA:   3'- -GUGaGUGGCGCGGGACg-GCUGCgAgu -5'
23246 3' -61 NC_005259.1 + 13473 0.69 0.327298
Target:  5'- uGCUCACCGCGCUgc-CCGACGauguCUCGg -3'
miRNA:   3'- gUGAGUGGCGCGGgacGGCUGC----GAGU- -5'
23246 3' -61 NC_005259.1 + 19532 0.69 0.319771
Target:  5'- uCAC-CGCCGUGCag-GCCGACGCg-- -3'
miRNA:   3'- -GUGaGUGGCGCGggaCGGCUGCGagu -5'
23246 3' -61 NC_005259.1 + 29147 0.69 0.319771
Target:  5'- uCGCUCACCGCGCUCgGCUGGacCGUc-- -3'
miRNA:   3'- -GUGAGUGGCGCGGGaCGGCU--GCGagu -5'
23246 3' -61 NC_005259.1 + 43281 0.69 0.319771
Target:  5'- gAC-CGCaGCGCCCgccGCCGACGCg-- -3'
miRNA:   3'- gUGaGUGgCGCGGGa--CGGCUGCGagu -5'
23246 3' -61 NC_005259.1 + 17555 0.69 0.309453
Target:  5'- cUACuUCACCGUGCCCgacgagauccucCCGACGCUg- -3'
miRNA:   3'- -GUG-AGUGGCGCGGGac----------GGCUGCGAgu -5'
23246 3' -61 NC_005259.1 + 40143 0.69 0.30511
Target:  5'- aGCUCGCCGUcgguugucgguGCCCgccCCGGCaGCUCGa -3'
miRNA:   3'- gUGAGUGGCG-----------CGGGac-GGCUG-CGAGU- -5'
23246 3' -61 NC_005259.1 + 60549 0.7 0.284094
Target:  5'- cCGCUCGuCgGCauGCCCggUGCCGACGgUCAg -3'
miRNA:   3'- -GUGAGU-GgCG--CGGG--ACGGCUGCgAGU- -5'
23246 3' -61 NC_005259.1 + 44845 0.7 0.284094
Target:  5'- ---aCACCGCGCCCgaGCaGuCGCUCAg -3'
miRNA:   3'- gugaGUGGCGCGGGa-CGgCuGCGAGU- -5'
23246 3' -61 NC_005259.1 + 1368 0.7 0.251638
Target:  5'- cCGCUCGCCGCgccGCCCgcgagGCCcGCGCa-- -3'
miRNA:   3'- -GUGAGUGGCG---CGGGa----CGGcUGCGagu -5'
23246 3' -61 NC_005259.1 + 44727 0.7 0.251021
Target:  5'- gCACccggCAgCGCGCCCUcgaccgcGCCGAgGCUCu -3'
miRNA:   3'- -GUGa---GUgGCGCGGGA-------CGGCUgCGAGu -5'
23246 3' -61 NC_005259.1 + 20167 0.71 0.233669
Target:  5'- gGC-CACCGCGCCCgccgccucgGCUGACGagaUCGc -3'
miRNA:   3'- gUGaGUGGCGCGGGa--------CGGCUGCg--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.