Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23246 | 5' | -53.5 | NC_005259.1 | + | 4981 | 0.66 | 0.849731 |
Target: 5'- --cGAGUUCGGccgaugGCCGGGCACu -3' miRNA: 3'- gcaCUCGAGCUuuucgaCGGCCUGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 6205 | 0.68 | 0.744032 |
Target: 5'- gCGUGAGCggGguGAGCcGCCGcgccGACACc -3' miRNA: 3'- -GCACUCGagCuuUUCGaCGGC----CUGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 9381 | 0.67 | 0.794679 |
Target: 5'- --cGAGCUCGGAGAGCaacGCaCGcGCGCc -3' miRNA: 3'- gcaCUCGAGCUUUUCGa--CG-GCcUGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 10253 | 0.68 | 0.744032 |
Target: 5'- gGUGuGCUUGAuGAGCggGCCGGucuCAg -3' miRNA: 3'- gCACuCGAGCUuUUCGa-CGGCCu--GUg -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 17736 | 0.66 | 0.823112 |
Target: 5'- cCGUGGcuGCUCGAcgcgauccguGAGGCcGCCGcGCGCc -3' miRNA: 3'- -GCACU--CGAGCU----------UUUCGaCGGCcUGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 23346 | 0.69 | 0.66867 |
Target: 5'- --cGGGCUCGAggcugccugcGAGGCcGCCGaGGCAUg -3' miRNA: 3'- gcaCUCGAGCU----------UUUCGaCGGC-CUGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 36118 | 0.66 | 0.849731 |
Target: 5'- gGUGAGCguaagcaGuuGGGCcGCCGGGCu- -3' miRNA: 3'- gCACUCGag-----CuuUUCGaCGGCCUGug -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 37505 | 0.68 | 0.722896 |
Target: 5'- gGUGAGCaCGAu--GCUGCCcGACGa -3' miRNA: 3'- gCACUCGaGCUuuuCGACGGcCUGUg -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 39394 | 0.77 | 0.255602 |
Target: 5'- aCGcUGAGCUUGGuccaccccGAGGCggUGCCGGACACc -3' miRNA: 3'- -GC-ACUCGAGCU--------UUUCG--ACGGCCUGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 40320 | 1.09 | 0.001911 |
Target: 5'- uCGUGAGCUCGAAAAGCUGCCGGACACc -3' miRNA: 3'- -GCACUCGAGCUUUUCGACGGCCUGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 41308 | 0.68 | 0.764713 |
Target: 5'- cCGUGAGCgcgaggucgaccUCGAAAagGGCggugccGUCGGAUACc -3' miRNA: 3'- -GCACUCG------------AGCUUU--UCGa-----CGGCCUGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 44328 | 0.71 | 0.558861 |
Target: 5'- -uUGAGCgccgCGu--AGCUGCCGGGCu- -3' miRNA: 3'- gcACUCGa---GCuuuUCGACGGCCUGug -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 46154 | 0.66 | 0.8322 |
Target: 5'- --cGAGCaugUCGAAuaccGCUugcccGCCGGGCGCg -3' miRNA: 3'- gcaCUCG---AGCUUuu--CGA-----CGGCCUGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 46679 | 0.67 | 0.794679 |
Target: 5'- --cGAGCUCGGccuGAGCcGCCGccgcgucccucGACGCg -3' miRNA: 3'- gcaCUCGAGCUu--UUCGaCGGC-----------CUGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 46833 | 0.67 | 0.774854 |
Target: 5'- aGUGAGCgcccCGgcGAGCUGCCcGAgucCGCu -3' miRNA: 3'- gCACUCGa---GCuuUUCGACGGcCU---GUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 48904 | 0.7 | 0.635631 |
Target: 5'- --aGAGCUCaacGAGCUGCUGGGCc- -3' miRNA: 3'- gcaCUCGAGcuuUUCGACGGCCUGug -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 51345 | 0.74 | 0.4066 |
Target: 5'- gGUGAGCUCGGAua--UGCCcGGugGCa -3' miRNA: 3'- gCACUCGAGCUUuucgACGG-CCugUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 55653 | 0.66 | 0.8322 |
Target: 5'- cCGUGGGCUC---AGGUcauUGCCGGuCAUu -3' miRNA: 3'- -GCACUCGAGcuuUUCG---ACGGCCuGUG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 58571 | 0.67 | 0.784846 |
Target: 5'- -uUGGGC-CGGAucgcggcgcGGCUGCCGGGC-Cg -3' miRNA: 3'- gcACUCGaGCUUu--------UCGACGGCCUGuG- -5' |
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23246 | 5' | -53.5 | NC_005259.1 | + | 59137 | 0.76 | 0.312866 |
Target: 5'- gCGUcGAGCUCGGcagcggugccggGGAGCUGCUcaGGGCGCu -3' miRNA: 3'- -GCA-CUCGAGCU------------UUUCGACGG--CCUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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