miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23247 3' -57.2 NC_005259.1 + 11412 0.66 0.686679
Target:  5'- uUCGGCUCGugGCCggugcaACGGgGaUGCuUGGGCCg -3'
miRNA:   3'- -AGUUGAGC--UGG------UGCUgC-ACG-GCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 6309 0.66 0.686679
Target:  5'- -gAugUCGACggCAUGACcuaccuUGCCGGGCa -3'
miRNA:   3'- agUugAGCUG--GUGCUGc-----ACGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 45294 0.66 0.686679
Target:  5'- aCAugUUuACCGCGcCGgugacGCCGaGGCCg -3'
miRNA:   3'- aGUugAGcUGGUGCuGCa----CGGC-CCGG- -5'
23247 3' -57.2 NC_005259.1 + 8898 0.66 0.685635
Target:  5'- gUCAcGCUCGGCCugcUGACGgGCCgcguucuGGGCUc -3'
miRNA:   3'- -AGU-UGAGCUGGu--GCUGCaCGG-------CCCGG- -5'
23247 3' -57.2 NC_005259.1 + 13714 0.67 0.665708
Target:  5'- cUCGACacCGACaauCGAgGUGCCGugauGGCCc -3'
miRNA:   3'- -AGUUGa-GCUGgu-GCUgCACGGC----CCGG- -5'
23247 3' -57.2 NC_005259.1 + 22820 0.67 0.665708
Target:  5'- cCGAUgugUGACUGCGuCGUGCUGGcCCg -3'
miRNA:   3'- aGUUGa--GCUGGUGCuGCACGGCCcGG- -5'
23247 3' -57.2 NC_005259.1 + 30150 0.67 0.655173
Target:  5'- gCAGCUCGACCG-GGCc-GCCuacaGGCCg -3'
miRNA:   3'- aGUUGAGCUGGUgCUGcaCGGc---CCGG- -5'
23247 3' -57.2 NC_005259.1 + 14324 0.67 0.655173
Target:  5'- cUCGACgCcGCCGCccGCGUG-CGGGCCg -3'
miRNA:   3'- -AGUUGaGcUGGUGc-UGCACgGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 58188 0.67 0.655173
Target:  5'- aCGuCUUGACCGcCGugGgcuUGCCGGuGUCa -3'
miRNA:   3'- aGUuGAGCUGGU-GCugC---ACGGCC-CGG- -5'
23247 3' -57.2 NC_005259.1 + 66044 0.67 0.655173
Target:  5'- -gAGCUCGACguaGACGccGCCguGGGCCu -3'
miRNA:   3'- agUUGAGCUGgugCUGCa-CGG--CCCGG- -5'
23247 3' -57.2 NC_005259.1 + 39976 0.67 0.634055
Target:  5'- aCuGCUCGACCAccuCGACGgGCUGaucGCCg -3'
miRNA:   3'- aGuUGAGCUGGU---GCUGCaCGGCc--CGG- -5'
23247 3' -57.2 NC_005259.1 + 14638 0.67 0.632999
Target:  5'- aUCAAUUgcgUGACgAUGGCGUGggcucagcccgacUCGGGCCg -3'
miRNA:   3'- -AGUUGA---GCUGgUGCUGCAC-------------GGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 33435 0.67 0.627715
Target:  5'- gCGGCUCaagcucgcucgguguGACC-C-ACGUGCCGGGUg -3'
miRNA:   3'- aGUUGAG---------------CUGGuGcUGCACGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 3306 0.67 0.62349
Target:  5'- cUCGGCgagCGcuGCguCGACGUgagcGCCGGGCa -3'
miRNA:   3'- -AGUUGa--GC--UGguGCUGCA----CGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 44323 0.68 0.612931
Target:  5'- gCGugUUGAgCGCcGCGUagcuGCCGGGCUu -3'
miRNA:   3'- aGUugAGCUgGUGcUGCA----CGGCCCGG- -5'
23247 3' -57.2 NC_005259.1 + 32678 0.68 0.612931
Target:  5'- cCGACUCG-CaauCGuCGUaGCCGGGCg -3'
miRNA:   3'- aGUUGAGCuGgu-GCuGCA-CGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 64100 0.68 0.602387
Target:  5'- gUCAugcACUCGACCGCG-CGcuugaucaaUGCCGccugaccgagcGGCCc -3'
miRNA:   3'- -AGU---UGAGCUGGUGCuGC---------ACGGC-----------CCGG- -5'
23247 3' -57.2 NC_005259.1 + 23647 0.68 0.591867
Target:  5'- uUCGGCccgcCGACgGCGACG-GCUGGaccGCCg -3'
miRNA:   3'- -AGUUGa---GCUGgUGCUGCaCGGCC---CGG- -5'
23247 3' -57.2 NC_005259.1 + 10731 0.68 0.591867
Target:  5'- -gAugUCGgugaucACCGCG-CGcUGCCGGGCg -3'
miRNA:   3'- agUugAGC------UGGUGCuGC-ACGGCCCGg -5'
23247 3' -57.2 NC_005259.1 + 60571 0.68 0.581379
Target:  5'- cCGACggucaggCGGCCcACGGCGaGUCGGGUg -3'
miRNA:   3'- aGUUGa------GCUGG-UGCUGCaCGGCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.