miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23248 3' -61.2 NC_005259.1 + 36672 0.7 0.271269
Target:  5'- gCCGCcGCCGCCGGGGucuugaccguccucGCCcGC-CGAUg -3'
miRNA:   3'- -GGCGaCGGCGGCUCU--------------CGGaCGuGCUA- -5'
23248 3' -61.2 NC_005259.1 + 45176 0.7 0.273248
Target:  5'- uUGUUGCgCGCCGAG-GUCaGCGCGGUg -3'
miRNA:   3'- gGCGACG-GCGGCUCuCGGaCGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 46944 0.71 0.235243
Target:  5'- gCCGC-GCCGCCGAccgcguuGAGCUUGUugGc- -3'
miRNA:   3'- -GGCGaCGGCGGCU-------CUCGGACGugCua -5'
23248 3' -61.2 NC_005259.1 + 46240 0.71 0.217138
Target:  5'- uCgGCUGCCGCCugaGgcacgucgaccccgAGGGUCUGCGCGAg -3'
miRNA:   3'- -GgCGACGGCGG---C--------------UCUCGGACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 30713 0.73 0.160823
Target:  5'- uUGUUGCCGCCGAcGcGCC-GCACGAg -3'
miRNA:   3'- gGCGACGGCGGCU-CuCGGaCGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 38726 0.73 0.170741
Target:  5'- aCCGCUGCCGCCGuaccGGcgguggcccgccgcaGGCCggugagcUGCGCGAUc -3'
miRNA:   3'- -GGCGACGGCGGC----UC---------------UCGG-------ACGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 23888 0.74 0.144806
Target:  5'- uCCGCUGCCGCCc-GAGCCgccGCGCc-- -3'
miRNA:   3'- -GGCGACGGCGGcuCUCGGa--CGUGcua -5'
23248 3' -61.2 NC_005259.1 + 5443 0.74 0.141036
Target:  5'- cCCGCUGCCGCCGAcAGaucGCAUGAg -3'
miRNA:   3'- -GGCGACGGCGGCUcUCggaCGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 1842 0.74 0.133764
Target:  5'- gCCGCUGCCGCCGAGgccgagaaAGCCgccGcCGCGu- -3'
miRNA:   3'- -GGCGACGGCGGCUC--------UCGGa--C-GUGCua -5'
23248 3' -61.2 NC_005259.1 + 35645 0.78 0.067959
Target:  5'- gCCGCUGCCGCuggCGAGgguGGCCaGCGCGGUg -3'
miRNA:   3'- -GGCGACGGCG---GCUC---UCGGaCGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 38952 1.07 0.000451
Target:  5'- gCCGCUGCCGCCGAGAGCCUGCACGAUg -3'
miRNA:   3'- -GGCGACGGCGGCUCUCGGACGUGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.