miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23248 3' -61.2 NC_005259.1 + 58188 0.68 0.353907
Target:  5'- aCGUcuUGaCCGCCGuGGGCUUGC-CGGUg -3'
miRNA:   3'- gGCG--AC-GGCGGCuCUCGGACGuGCUA- -5'
23248 3' -61.2 NC_005259.1 + 36173 0.68 0.353907
Target:  5'- aCC-UUGCCgagGUCGAGAGCCUGCGuacUGAUg -3'
miRNA:   3'- -GGcGACGG---CGGCUCUCGGACGU---GCUA- -5'
23248 3' -61.2 NC_005259.1 + 43885 0.68 0.345922
Target:  5'- gCGUUGCCGCCGAcauuGCCcGCGCc-- -3'
miRNA:   3'- gGCGACGGCGGCUcu--CGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 26117 0.68 0.338066
Target:  5'- aCCGCcGCCGCCGGucGCCgGUcCGAc -3'
miRNA:   3'- -GGCGaCGGCGGCUcuCGGaCGuGCUa -5'
23248 3' -61.2 NC_005259.1 + 37655 0.68 0.330341
Target:  5'- aCCGCcGCCGCCGccGGuGCC-GcCACGGUu -3'
miRNA:   3'- -GGCGaCGGCGGC--UCuCGGaC-GUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 24134 0.67 0.413364
Target:  5'- aCCGCcGCCGCCcugcucGCCgaguUGCGCGAUg -3'
miRNA:   3'- -GGCGaCGGCGGcucu--CGG----ACGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 66188 0.67 0.413364
Target:  5'- aCCGCUGCCGgUGcaguacGGGUCagGCGCGGUc -3'
miRNA:   3'- -GGCGACGGCgGCu-----CUCGGa-CGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 66051 0.67 0.395754
Target:  5'- aCGUagacGCCGCCGuGGGCCUGCu---- -3'
miRNA:   3'- gGCGa---CGGCGGCuCUCGGACGugcua -5'
23248 3' -61.2 NC_005259.1 + 45321 0.67 0.395754
Target:  5'- -gGCcGCCGCCGAacugcguGGCCUGCGCc-- -3'
miRNA:   3'- ggCGaCGGCGGCUc------UCGGACGUGcua -5'
23248 3' -61.2 NC_005259.1 + 4600 0.67 0.387133
Target:  5'- aCCGCcauagGCaCGCUGucGGGCCggugGCGCGAg -3'
miRNA:   3'- -GGCGa----CG-GCGGCu-CUCGGa---CGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 24341 0.66 0.449988
Target:  5'- gCGCUGgccuaCCGCCGGGuGCUcGCACa-- -3'
miRNA:   3'- gGCGAC-----GGCGGCUCuCGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 1374 0.66 0.449988
Target:  5'- gCCGC-GCCGCCcgcGAG-GCCcgcGCAUGAg -3'
miRNA:   3'- -GGCGaCGGCGG---CUCuCGGa--CGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 40640 0.66 0.440663
Target:  5'- aUGCcGUCGCCGAGAaagucaugcucGCCgagcaGCGCGAg -3'
miRNA:   3'- gGCGaCGGCGGCUCU-----------CGGa----CGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 39910 0.66 0.440663
Target:  5'- cCCGCcucgauCCGUCGAGGGCC-GCGuCGAg -3'
miRNA:   3'- -GGCGac----GGCGGCUCUCGGaCGU-GCUa -5'
23248 3' -61.2 NC_005259.1 + 14971 0.66 0.437887
Target:  5'- gCGCauucaagGCCGCCGGGuacaagacacagcaGGCCggGUACGAg -3'
miRNA:   3'- gGCGa------CGGCGGCUC--------------UCGGa-CGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 50901 0.66 0.431449
Target:  5'- aCCGCUGCgugcgauagCGCCGcauGAGCC-GCACc-- -3'
miRNA:   3'- -GGCGACG---------GCGGCu--CUCGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 64687 0.66 0.425975
Target:  5'- gCCGC-GCCGCCGAGcgauacccacauaccGaugcaccacggGCaCUGCACGAa -3'
miRNA:   3'- -GGCGaCGGCGGCUC---------------U-----------CG-GACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 1879 0.66 0.422348
Target:  5'- uCCGUaagcagGCCGCCGAGA-UC-GCGCGAg -3'
miRNA:   3'- -GGCGa-----CGGCGGCUCUcGGaCGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 48391 0.66 0.422348
Target:  5'- gUCGUUGCCGCCGAc-GCCcGCcguCGAg -3'
miRNA:   3'- -GGCGACGGCGGCUcuCGGaCGu--GCUa -5'
23248 3' -61.2 NC_005259.1 + 8876 0.66 0.478594
Target:  5'- gCCGCacccacGCCGCCuGAGcgucacgcucGGCCUGCugACGGg -3'
miRNA:   3'- -GGCGa-----CGGCGG-CUC----------UCGGACG--UGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.