miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23248 3' -61.2 NC_005259.1 + 39910 0.66 0.440663
Target:  5'- cCCGCcucgauCCGUCGAGGGCC-GCGuCGAg -3'
miRNA:   3'- -GGCGac----GGCGGCUCUCGGaCGU-GCUa -5'
23248 3' -61.2 NC_005259.1 + 38952 1.07 0.000451
Target:  5'- gCCGCUGCCGCCGAGAGCCUGCACGAUg -3'
miRNA:   3'- -GGCGACGGCGGCUCUCGGACGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 38797 0.7 0.253973
Target:  5'- aCCGCUGCCGauGAGAucGCCcGCgcccGCGAUg -3'
miRNA:   3'- -GGCGACGGCggCUCU--CGGaCG----UGCUA- -5'
23248 3' -61.2 NC_005259.1 + 38726 0.73 0.170741
Target:  5'- aCCGCUGCCGCCGuaccGGcgguggcccgccgcaGGCCggugagcUGCGCGAUc -3'
miRNA:   3'- -GGCGACGGCGGC----UC---------------UCGG-------ACGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 37655 0.68 0.330341
Target:  5'- aCCGCcGCCGCCGccGGuGCC-GcCACGGUu -3'
miRNA:   3'- -GGCGaCGGCGGC--UCuCGGaC-GUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 37252 0.66 0.45942
Target:  5'- -gGCUGCCGCCGuu-GCCagGCuuGAg -3'
miRNA:   3'- ggCGACGGCGGCucuCGGa-CGugCUa -5'
23248 3' -61.2 NC_005259.1 + 37217 0.69 0.279929
Target:  5'- gCCGCcGCCGCCGGGgcgcuGGCCcgUGC-CGGa -3'
miRNA:   3'- -GGCGaCGGCGGCUC-----UCGG--ACGuGCUa -5'
23248 3' -61.2 NC_005259.1 + 36672 0.7 0.271269
Target:  5'- gCCGCcGCCGCCGGGGucuugaccguccucGCCcGC-CGAUg -3'
miRNA:   3'- -GGCGaCGGCGGCUCU--------------CGGaCGuGCUA- -5'
23248 3' -61.2 NC_005259.1 + 36173 0.68 0.353907
Target:  5'- aCC-UUGCCgagGUCGAGAGCCUGCGuacUGAUg -3'
miRNA:   3'- -GGcGACGG---CGGCUCUCGGACGU---GCUA- -5'
23248 3' -61.2 NC_005259.1 + 35876 0.7 0.259635
Target:  5'- aCCGCagccGCCGCCGAggcagaccacggcGAGCCauucugcguUGCGCGGg -3'
miRNA:   3'- -GGCGa---CGGCGGCU-------------CUCGG---------ACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 35645 0.78 0.067959
Target:  5'- gCCGCUGCCGCuggCGAGgguGGCCaGCGCGGUg -3'
miRNA:   3'- -GGCGACGGCG---GCUC---UCGGaCGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 35510 0.7 0.2478
Target:  5'- cCCGUUGCCGCCGcc-GCCggGCACa-- -3'
miRNA:   3'- -GGCGACGGCGGCucuCGGa-CGUGcua -5'
23248 3' -61.2 NC_005259.1 + 34446 0.66 0.422348
Target:  5'- -aGCUGCCGaCCGGGcAGCgUGuCGCuGAUg -3'
miRNA:   3'- ggCGACGGC-GGCUC-UCGgAC-GUG-CUA- -5'
23248 3' -61.2 NC_005259.1 + 30713 0.73 0.160823
Target:  5'- uUGUUGCCGCCGAcGcGCC-GCACGAg -3'
miRNA:   3'- gGCGACGGCGGCU-CuCGGaCGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 27523 0.66 0.45942
Target:  5'- uCCGCacacGCCGUCGAG-GCCccacgGCGgGAUg -3'
miRNA:   3'- -GGCGa---CGGCGGCUCuCGGa----CGUgCUA- -5'
23248 3' -61.2 NC_005259.1 + 26564 0.69 0.315283
Target:  5'- gCUGUaGCCGCCGAGcacgaaCUUGCGCGAg -3'
miRNA:   3'- -GGCGaCGGCGGCUCuc----GGACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 26117 0.68 0.338066
Target:  5'- aCCGCcGCCGCCGGucGCCgGUcCGAc -3'
miRNA:   3'- -GGCGaCGGCGGCUcuCGGaCGuGCUa -5'
23248 3' -61.2 NC_005259.1 + 24341 0.66 0.449988
Target:  5'- gCGCUGgccuaCCGCCGGGuGCUcGCACa-- -3'
miRNA:   3'- gGCGAC-----GGCGGCUCuCGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 24134 0.67 0.413364
Target:  5'- aCCGCcGCCGCCcugcucGCCgaguUGCGCGAUg -3'
miRNA:   3'- -GGCGaCGGCGGcucu--CGG----ACGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 23888 0.74 0.144806
Target:  5'- uCCGCUGCCGCCc-GAGCCgccGCGCc-- -3'
miRNA:   3'- -GGCGACGGCGGcuCUCGGa--CGUGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.