miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23248 3' -61.2 NC_005259.1 + 48391 0.66 0.422348
Target:  5'- gUCGUUGCCGCCGAc-GCCcGCcguCGAg -3'
miRNA:   3'- -GGCGACGGCGGCUcuCGGaCGu--GCUa -5'
23248 3' -61.2 NC_005259.1 + 24134 0.67 0.413364
Target:  5'- aCCGCcGCCGCCcugcucGCCgaguUGCGCGAUg -3'
miRNA:   3'- -GGCGaCGGCGGcucu--CGG----ACGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 66188 0.67 0.413364
Target:  5'- aCCGCUGCCGgUGcaguacGGGUCagGCGCGGUc -3'
miRNA:   3'- -GGCGACGGCgGCu-----CUCGGa-CGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 45321 0.67 0.395754
Target:  5'- -gGCcGCCGCCGAacugcguGGCCUGCGCc-- -3'
miRNA:   3'- ggCGaCGGCGGCUc------UCGGACGUGcua -5'
23248 3' -61.2 NC_005259.1 + 66051 0.67 0.395754
Target:  5'- aCGUagacGCCGCCGuGGGCCUGCu---- -3'
miRNA:   3'- gGCGa---CGGCGGCuCUCGGACGugcua -5'
23248 3' -61.2 NC_005259.1 + 4600 0.67 0.387133
Target:  5'- aCCGCcauagGCaCGCUGucGGGCCggugGCGCGAg -3'
miRNA:   3'- -GGCGa----CG-GCGGCu-CUCGGa---CGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 36173 0.68 0.353907
Target:  5'- aCC-UUGCCgagGUCGAGAGCCUGCGuacUGAUg -3'
miRNA:   3'- -GGcGACGG---CGGCUCUCGGACGU---GCUA- -5'
23248 3' -61.2 NC_005259.1 + 58188 0.68 0.353907
Target:  5'- aCGUcuUGaCCGCCGuGGGCUUGC-CGGUg -3'
miRNA:   3'- gGCG--AC-GGCGGCuCUCGGACGuGCUA- -5'
23248 3' -61.2 NC_005259.1 + 43885 0.68 0.345922
Target:  5'- gCGUUGCCGCCGAcauuGCCcGCGCc-- -3'
miRNA:   3'- gGCGACGGCGGCUcu--CGGaCGUGcua -5'
23248 3' -61.2 NC_005259.1 + 26117 0.68 0.338066
Target:  5'- aCCGCcGCCGCCGGucGCCgGUcCGAc -3'
miRNA:   3'- -GGCGaCGGCGGCUcuCGGaCGuGCUa -5'
23248 3' -61.2 NC_005259.1 + 37655 0.68 0.330341
Target:  5'- aCCGCcGCCGCCGccGGuGCC-GcCACGGUu -3'
miRNA:   3'- -GGCGaCGGCGGC--UCuCGGaC-GUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 11450 0.69 0.315283
Target:  5'- cUCGCUGCCGCCG-GuGCCUaucgucucGCAgauCGAg -3'
miRNA:   3'- -GGCGACGGCGGCuCuCGGA--------CGU---GCUa -5'
23248 3' -61.2 NC_005259.1 + 26564 0.69 0.315283
Target:  5'- gCUGUaGCCGCCGAGcacgaaCUUGCGCGAg -3'
miRNA:   3'- -GGCGaCGGCGGCUCuc----GGACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 43023 0.69 0.307951
Target:  5'- aCCGgcgaUGCCGCCGAGcaGGCCgccgaGCAgCGAa -3'
miRNA:   3'- -GGCg---ACGGCGGCUC--UCGGa----CGU-GCUa -5'
23248 3' -61.2 NC_005259.1 + 48178 0.69 0.30075
Target:  5'- cCCGCcGCCGCCGGGuGUCggaccggGCAUGc- -3'
miRNA:   3'- -GGCGaCGGCGGCUCuCGGa------CGUGCua -5'
23248 3' -61.2 NC_005259.1 + 37217 0.69 0.279929
Target:  5'- gCCGCcGCCGCCGGGgcgcuGGCCcgUGC-CGGa -3'
miRNA:   3'- -GGCGaCGGCGGCUC-----UCGG--ACGuGCUa -5'
23248 3' -61.2 NC_005259.1 + 45176 0.7 0.273248
Target:  5'- uUGUUGCgCGCCGAG-GUCaGCGCGGUg -3'
miRNA:   3'- gGCGACG-GCGGCUCuCGGaCGUGCUA- -5'
23248 3' -61.2 NC_005259.1 + 36672 0.7 0.271269
Target:  5'- gCCGCcGCCGCCGGGGucuugaccguccucGCCcGC-CGAUg -3'
miRNA:   3'- -GGCGaCGGCGGCUCU--------------CGGaCGuGCUA- -5'
23248 3' -61.2 NC_005259.1 + 35876 0.7 0.259635
Target:  5'- aCCGCagccGCCGCCGAggcagaccacggcGAGCCauucugcguUGCGCGGg -3'
miRNA:   3'- -GGCGa---CGGCGGCU-------------CUCGG---------ACGUGCUa -5'
23248 3' -61.2 NC_005259.1 + 38797 0.7 0.253973
Target:  5'- aCCGCUGCCGauGAGAucGCCcGCgcccGCGAUg -3'
miRNA:   3'- -GGCGACGGCggCUCU--CGGaCG----UGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.