miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23248 5' -58.1 NC_005259.1 + 38988 1.1 0.00049
Target:  5'- gAUACCCUGCCCAGCCUCGUUGAGCGCg -3'
miRNA:   3'- -UAUGGGACGGGUCGGAGCAACUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 28131 0.72 0.262393
Target:  5'- cGUGCCgacguaggcgaugagCUGCCCGGCCUCGac--GCGCu -3'
miRNA:   3'- -UAUGG---------------GACGGGUCGGAGCaacuCGCG- -5'
23248 5' -58.1 NC_005259.1 + 55525 0.72 0.279266
Target:  5'- -aACUgUGCCCAcagcgccGCCUCGUUG-GCGUc -3'
miRNA:   3'- uaUGGgACGGGU-------CGGAGCAACuCGCG- -5'
23248 5' -58.1 NC_005259.1 + 63701 0.72 0.279959
Target:  5'- cUGCgCCUGCCCAGCggggaUCGggGccuGCGCa -3'
miRNA:   3'- uAUG-GGACGGGUCGg----AGCaaCu--CGCG- -5'
23248 5' -58.1 NC_005259.1 + 8244 0.7 0.373063
Target:  5'- -cACCCUGCCUuaccGGUCU---UGGGCGCg -3'
miRNA:   3'- uaUGGGACGGG----UCGGAgcaACUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 52392 0.7 0.38171
Target:  5'- -cAgCCUGCCUcgGGCCaUCGaggugUGGGCGCu -3'
miRNA:   3'- uaUgGGACGGG--UCGG-AGCa----ACUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 33977 0.69 0.408441
Target:  5'- -cACCUUGCCCugAGCCggguaugCGgUGAGCuGCa -3'
miRNA:   3'- uaUGGGACGGG--UCGGa------GCaACUCG-CG- -5'
23248 5' -58.1 NC_005259.1 + 45162 0.68 0.47511
Target:  5'- -gGCC--GCCCuuGGCCUUGUUGcGCGCc -3'
miRNA:   3'- uaUGGgaCGGG--UCGGAGCAACuCGCG- -5'
23248 5' -58.1 NC_005259.1 + 32544 0.68 0.485079
Target:  5'- -gACCUUGCUguUGGCCgcccCGgcGAGCGCg -3'
miRNA:   3'- uaUGGGACGG--GUCGGa---GCaaCUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 36727 0.67 0.509396
Target:  5'- -gACCCgccgcGCCC-GCCgggauacgugauccCGUUGAGCGUg -3'
miRNA:   3'- uaUGGGa----CGGGuCGGa-------------GCAACUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 64799 0.67 0.515556
Target:  5'- -gGCUgugUGCCuCGGCCUCGgcggcaaUGAGCGUg -3'
miRNA:   3'- uaUGGg--ACGG-GUCGGAGCa------ACUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 54536 0.67 0.515556
Target:  5'- aGUAUCCgGCCCAGCCacacaGaUUGAacuuGCGCg -3'
miRNA:   3'- -UAUGGGaCGGGUCGGag---C-AACU----CGCG- -5'
23248 5' -58.1 NC_005259.1 + 50485 0.67 0.515556
Target:  5'- -aACCCUGCUCgaugAGCCggUCGaugUGGGCGg -3'
miRNA:   3'- uaUGGGACGGG----UCGG--AGCa--ACUCGCg -5'
23248 5' -58.1 NC_005259.1 + 9543 0.67 0.515556
Target:  5'- -cACCggagagCUGCCCGGCCUCGacc-GCGUc -3'
miRNA:   3'- uaUGG------GACGGGUCGGAGCaacuCGCG- -5'
23248 5' -58.1 NC_005259.1 + 6521 0.67 0.525889
Target:  5'- -cGCCgUGCgcgcgacaaCCGGCCUCGgggcGAGCGg -3'
miRNA:   3'- uaUGGgACG---------GGUCGGAGCaa--CUCGCg -5'
23248 5' -58.1 NC_005259.1 + 64748 0.67 0.525889
Target:  5'- -cACCC-GCCCAccgcGCCUCGcgacgGuGCGCc -3'
miRNA:   3'- uaUGGGaCGGGU----CGGAGCaa---CuCGCG- -5'
23248 5' -58.1 NC_005259.1 + 47883 0.67 0.536298
Target:  5'- -aGCUUgGCCgGGUcagcgucggCUCGUUGAGCGCc -3'
miRNA:   3'- uaUGGGaCGGgUCG---------GAGCAACUCGCG- -5'
23248 5' -58.1 NC_005259.1 + 46376 0.67 0.536298
Target:  5'- -cGCCCgGCCCcaucucacgcAGCCgcgCGgUGAGgGCa -3'
miRNA:   3'- uaUGGGaCGGG----------UCGGa--GCaACUCgCG- -5'
23248 5' -58.1 NC_005259.1 + 63142 0.67 0.536298
Target:  5'- -aGCCgCUGUCCucGCCcaCGUUGAGCaGCc -3'
miRNA:   3'- uaUGG-GACGGGu-CGGa-GCAACUCG-CG- -5'
23248 5' -58.1 NC_005259.1 + 21212 0.67 0.543627
Target:  5'- gGUGCCgaGCUCAuccgagccgaguacGCCUCGgc-AGCGCg -3'
miRNA:   3'- -UAUGGgaCGGGU--------------CGGAGCaacUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.