miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 63182 0.67 0.424805
Target:  5'- cGCCgaGGUgAUCGCACCCcGGUCgUGCg -3'
miRNA:   3'- -UGGg-CCGgUGGUGUGGG-CUAGgACGg -5'
23249 5' -61.5 NC_005259.1 + 25180 0.67 0.415893
Target:  5'- gACCCGuaCGCCGC-CgCCGAUCCcaCCg -3'
miRNA:   3'- -UGGGCcgGUGGUGuG-GGCUAGGacGG- -5'
23249 5' -61.5 NC_005259.1 + 36626 0.67 0.424805
Target:  5'- cGCCCGcGCCGcCCGCAaggcCCgCGAUCagcgaGCCg -3'
miRNA:   3'- -UGGGC-CGGU-GGUGU----GG-GCUAGga---CGG- -5'
23249 5' -61.5 NC_005259.1 + 18291 0.67 0.424805
Target:  5'- cGCCCGacgaGCCGCCGuucUGCCCGGUgugcgacaCCgagGCCg -3'
miRNA:   3'- -UGGGC----CGGUGGU---GUGGGCUA--------GGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 46237 0.67 0.390708
Target:  5'- aGCUCGGCUGCCGCcugaggcacgucgacCCCGAgggUCUGCg -3'
miRNA:   3'- -UGGGCCGGUGGUGu--------------GGGCUa--GGACGg -5'
23249 5' -61.5 NC_005259.1 + 36044 0.67 0.424805
Target:  5'- aGCgaGGCCACC-CGCgCGAgcaccaCCUGCUg -3'
miRNA:   3'- -UGggCCGGUGGuGUGgGCUa-----GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 7275 0.67 0.424805
Target:  5'- uGCUCGGCUACCGC-CCCGccCCcaaGCa -3'
miRNA:   3'- -UGGGCCGGUGGUGuGGGCuaGGa--CGg -5'
23249 5' -61.5 NC_005259.1 + 37666 0.68 0.375585
Target:  5'- cGCCgGuGCCGCCACgguugguguauguGCCCGcgCCggacugauuuugcccUGCCa -3'
miRNA:   3'- -UGGgC-CGGUGGUG-------------UGGGCuaGG---------------ACGG- -5'
23249 5' -61.5 NC_005259.1 + 47958 0.68 0.373103
Target:  5'- uGCCgaUGGCCGCCGCGCCgcccgCGAauaUGCCg -3'
miRNA:   3'- -UGG--GCCGGUGGUGUGG-----GCUaggACGG- -5'
23249 5' -61.5 NC_005259.1 + 31001 0.68 0.372279
Target:  5'- cGCCguggGGCCGgaacuguCCACACgUGAUCgUGCCg -3'
miRNA:   3'- -UGGg---CCGGU-------GGUGUGgGCUAGgACGG- -5'
23249 5' -61.5 NC_005259.1 + 13023 0.68 0.372279
Target:  5'- cGCCCGGCCccagcacGCCAacacguucgGCCCG-UUCUGCg -3'
miRNA:   3'- -UGGGCCGG-------UGGUg--------UGGGCuAGGACGg -5'
23249 5' -61.5 NC_005259.1 + 26107 0.68 0.364912
Target:  5'- cCCCGagcagaccGCCGCCGCcgguCgCCGGUCCgacGCCg -3'
miRNA:   3'- uGGGC--------CGGUGGUGu---G-GGCUAGGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 32990 0.68 0.364912
Target:  5'- -gCCGaggguGCCGCCACGCCCGAUgUCgGCa -3'
miRNA:   3'- ugGGC-----CGGUGGUGUGGGCUA-GGaCGg -5'
23249 5' -61.5 NC_005259.1 + 9803 0.68 0.364912
Target:  5'- cGCUCGcGCCACUAcCGCCCGcaCC-GCCg -3'
miRNA:   3'- -UGGGC-CGGUGGU-GUGGGCuaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 24818 0.68 0.364099
Target:  5'- cCCCGGCaCGCCGUGCCCGcaccgaccaagcaGUCCgUGCg -3'
miRNA:   3'- uGGGCCG-GUGGUGUGGGC-------------UAGG-ACGg -5'
23249 5' -61.5 NC_005259.1 + 17753 0.68 0.356845
Target:  5'- gAUCCgugaGGCCGCCGCGCgCCGggCCgaGCg -3'
miRNA:   3'- -UGGG----CCGGUGGUGUG-GGCuaGGa-CGg -5'
23249 5' -61.5 NC_005259.1 + 8880 0.68 0.356845
Target:  5'- cACCCacGCCGCCugagcgucACGCUCGG-CCUGCUg -3'
miRNA:   3'- -UGGGc-CGGUGG--------UGUGGGCUaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 58585 0.68 0.348117
Target:  5'- gGCgCGGCUGCCGgGCCgGAUCUUuucgagcGCCu -3'
miRNA:   3'- -UGgGCCGGUGGUgUGGgCUAGGA-------CGG- -5'
23249 5' -61.5 NC_005259.1 + 13083 0.68 0.348117
Target:  5'- gACCCGGCCauccgguGCCACcgacCCCGG-CCcGCUc -3'
miRNA:   3'- -UGGGCCGG-------UGGUGu---GGGCUaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 14879 0.68 0.341091
Target:  5'- uGCCCGaGCCGCCGCcguaUGGUCaaGCCa -3'
miRNA:   3'- -UGGGC-CGGUGGUGugg-GCUAGgaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.