miRNA display CGI


Results 41 - 60 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 9803 0.68 0.364912
Target:  5'- cGCUCGcGCCACUAcCGCCCGcaCC-GCCg -3'
miRNA:   3'- -UGGGC-CGGUGGU-GUGGGCuaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 32990 0.68 0.364912
Target:  5'- -gCCGaggguGCCGCCACGCCCGAUgUCgGCa -3'
miRNA:   3'- ugGGC-----CGGUGGUGUGGGCUA-GGaCGg -5'
23249 5' -61.5 NC_005259.1 + 26107 0.68 0.364912
Target:  5'- cCCCGagcagaccGCCGCCGCcgguCgCCGGUCCgacGCCg -3'
miRNA:   3'- uGGGC--------CGGUGGUGu---G-GGCUAGGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 13023 0.68 0.372279
Target:  5'- cGCCCGGCCccagcacGCCAacacguucgGCCCG-UUCUGCg -3'
miRNA:   3'- -UGGGCCGG-------UGGUg--------UGGGCuAGGACGg -5'
23249 5' -61.5 NC_005259.1 + 31001 0.68 0.372279
Target:  5'- cGCCguggGGCCGgaacuguCCACACgUGAUCgUGCCg -3'
miRNA:   3'- -UGGg---CCGGU-------GGUGUGgGCUAGgACGG- -5'
23249 5' -61.5 NC_005259.1 + 47958 0.68 0.373103
Target:  5'- uGCCgaUGGCCGCCGCGCCgcccgCGAauaUGCCg -3'
miRNA:   3'- -UGG--GCCGGUGGUGUGG-----GCUaggACGG- -5'
23249 5' -61.5 NC_005259.1 + 37666 0.68 0.375585
Target:  5'- cGCCgGuGCCGCCACgguugguguauguGCCCGcgCCggacugauuuugcccUGCCa -3'
miRNA:   3'- -UGGgC-CGGUGGUG-------------UGGGCuaGG---------------ACGG- -5'
23249 5' -61.5 NC_005259.1 + 24818 0.68 0.364099
Target:  5'- cCCCGGCaCGCCGUGCCCGcaccgaccaagcaGUCCgUGCg -3'
miRNA:   3'- uGGGCCG-GUGGUGUGGGC-------------UAGG-ACGg -5'
23249 5' -61.5 NC_005259.1 + 17753 0.68 0.356845
Target:  5'- gAUCCgugaGGCCGCCGCGCgCCGggCCgaGCg -3'
miRNA:   3'- -UGGG----CCGGUGGUGUG-GGCuaGGa-CGg -5'
23249 5' -61.5 NC_005259.1 + 8880 0.68 0.356845
Target:  5'- cACCCacGCCGCCugagcgucACGCUCGG-CCUGCUg -3'
miRNA:   3'- -UGGGc-CGGUGG--------UGUGGGCUaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 46821 0.68 0.332643
Target:  5'- -aCCGGCCACCugagugaGCGCCCcggcGAg-CUGCCc -3'
miRNA:   3'- ugGGCCGGUGG-------UGUGGG----CUagGACGG- -5'
23249 5' -61.5 NC_005259.1 + 45499 0.68 0.333405
Target:  5'- gGCCUuggucgcuguGGCCACCGCGCCgGuguuggCC-GCCg -3'
miRNA:   3'- -UGGG----------CCGGUGGUGUGGgCua----GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 20423 0.68 0.341091
Target:  5'- uACCCGGUCACCgACGCCacagugcuccaCGA-CgaGCCg -3'
miRNA:   3'- -UGGGCCGGUGG-UGUGG-----------GCUaGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 14879 0.68 0.341091
Target:  5'- uGCCCGaGCCGCCGCcguaUGGUCaaGCCa -3'
miRNA:   3'- -UGGGC-CGGUGGUGugg-GCUAGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 13083 0.68 0.348117
Target:  5'- gACCCGGCCauccgguGCCACcgacCCCGG-CCcGCUc -3'
miRNA:   3'- -UGGGCCGG-------UGGUGu---GGGCUaGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 58585 0.68 0.348117
Target:  5'- gGCgCGGCUGCCGgGCCgGAUCUUuucgagcGCCu -3'
miRNA:   3'- -UGgGCCGGUGGUgUGGgCUAGGA-------CGG- -5'
23249 5' -61.5 NC_005259.1 + 13406 0.68 0.356845
Target:  5'- cGCUCGGCCuuCCugGCCgGGgucgCC-GCCg -3'
miRNA:   3'- -UGGGCCGGu-GGugUGGgCUa---GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 65132 0.67 0.381419
Target:  5'- cGCaCCGGCgGCCACcCCCGAcaagUCgaaacggGCCa -3'
miRNA:   3'- -UG-GGCCGgUGGUGuGGGCUa---GGa------CGG- -5'
23249 5' -61.5 NC_005259.1 + 68220 0.67 0.381419
Target:  5'- uGCUCGGUgGaCCACgACCUGG-CCUGCUc -3'
miRNA:   3'- -UGGGCCGgU-GGUG-UGGGCUaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 53202 0.67 0.389857
Target:  5'- cCCCGGCgAUCAgauucgcguCGCCCGcgcCCUGCUu -3'
miRNA:   3'- uGGGCCGgUGGU---------GUGGGCua-GGACGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.