miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 53202 0.67 0.389857
Target:  5'- cCCCGGCgAUCAgauucgcguCGCCCGcgcCCUGCUu -3'
miRNA:   3'- uGGGCCGgUGGU---------GUGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 46237 0.67 0.390708
Target:  5'- aGCUCGGCUGCCGCcugaggcacgucgacCCCGAgggUCUGCg -3'
miRNA:   3'- -UGGGCCGGUGGUGu--------------GGGCUa--GGACGg -5'
23249 5' -61.5 NC_005259.1 + 39903 0.67 0.398417
Target:  5'- -gCC-GCCGCC-CGCCuCGAUCCgucgaggGCCg -3'
miRNA:   3'- ugGGcCGGUGGuGUGG-GCUAGGa------CGG- -5'
23249 5' -61.5 NC_005259.1 + 56110 0.67 0.398417
Target:  5'- cGCgUGGCCACCgaaacugugugcGCugCCGGUguaaaCCUGCg -3'
miRNA:   3'- -UGgGCCGGUGG------------UGugGGCUA-----GGACGg -5'
23249 5' -61.5 NC_005259.1 + 42480 0.67 0.398417
Target:  5'- gGCCCGGCCcguagaGCCGUgACCCG-UCCggcggugugGCCa -3'
miRNA:   3'- -UGGGCCGG------UGGUG-UGGGCuAGGa--------CGG- -5'
23249 5' -61.5 NC_005259.1 + 8406 0.67 0.415893
Target:  5'- aGCCgGGCCACCucgcuggcgaGCAUgCGAUgCUcguUGCCg -3'
miRNA:   3'- -UGGgCCGGUGG----------UGUGgGCUA-GG---ACGG- -5'
23249 5' -61.5 NC_005259.1 + 59689 0.67 0.415893
Target:  5'- -gCCGGaCCugCACACaCCGAgUCgUGUCc -3'
miRNA:   3'- ugGGCC-GGugGUGUG-GGCU-AGgACGG- -5'
23249 5' -61.5 NC_005259.1 + 64748 0.67 0.415893
Target:  5'- cACCCGcCCACCGCGCCucgcgaCGGUgC-GCCu -3'
miRNA:   3'- -UGGGCcGGUGGUGUGG------GCUAgGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 25180 0.67 0.415893
Target:  5'- gACCCGuaCGCCGC-CgCCGAUCCcaCCg -3'
miRNA:   3'- -UGGGCcgGUGGUGuG-GGCUAGGacGG- -5'
23249 5' -61.5 NC_005259.1 + 36626 0.67 0.424805
Target:  5'- cGCCCGcGCCGcCCGCAaggcCCgCGAUCagcgaGCCg -3'
miRNA:   3'- -UGGGC-CGGU-GGUGU----GG-GCUAGga---CGG- -5'
23249 5' -61.5 NC_005259.1 + 18291 0.67 0.424805
Target:  5'- cGCCCGacgaGCCGCCGuucUGCCCGGUgugcgacaCCgagGCCg -3'
miRNA:   3'- -UGGGC----CGGUGGU---GUGGGCUA--------GGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 63182 0.67 0.424805
Target:  5'- cGCCgaGGUgAUCGCACCCcGGUCgUGCg -3'
miRNA:   3'- -UGGg-CCGgUGGUGUGGG-CUAGgACGg -5'
23249 5' -61.5 NC_005259.1 + 36044 0.67 0.424805
Target:  5'- aGCgaGGCCACC-CGCgCGAgcaccaCCUGCUg -3'
miRNA:   3'- -UGggCCGGUGGuGUGgGCUa-----GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 7275 0.67 0.424805
Target:  5'- uGCUCGGCUACCGC-CCCGccCCcaaGCa -3'
miRNA:   3'- -UGGGCCGGUGGUGuGGGCuaGGa--CGg -5'
23249 5' -61.5 NC_005259.1 + 31551 0.66 0.432923
Target:  5'- cGCCUuguagGGUgccgcugCACCGCGCCUGAUCgUcGCCa -3'
miRNA:   3'- -UGGG-----CCG-------GUGGUGUGGGCUAGgA-CGG- -5'
23249 5' -61.5 NC_005259.1 + 6115 0.66 0.433831
Target:  5'- gGCCgaGGCCGCCGCuACgCGggCaCUGCa -3'
miRNA:   3'- -UGGg-CCGGUGGUG-UGgGCuaG-GACGg -5'
23249 5' -61.5 NC_005259.1 + 53148 0.66 0.433831
Target:  5'- gACCaucaGCCGCUACGCcgaggCCGAUCUcGCCa -3'
miRNA:   3'- -UGGgc--CGGUGGUGUG-----GGCUAGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 57677 0.66 0.433831
Target:  5'- gUCCGGCCaaucgaccgugGCCAggUugCCGggCUUGCCc -3'
miRNA:   3'- uGGGCCGG-----------UGGU--GugGGCuaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 17482 0.66 0.433831
Target:  5'- cGCCCGGCCAUgcgggCAaggacggcgaccUugCCGAUCCgaGCUc -3'
miRNA:   3'- -UGGGCCGGUG-----GU------------GugGGCUAGGa-CGG- -5'
23249 5' -61.5 NC_005259.1 + 18442 0.66 0.442966
Target:  5'- cGCCuCGuGCaaCACCGCGCacaccgCCGGUCCUgaGCCg -3'
miRNA:   3'- -UGG-GC-CG--GUGGUGUG------GGCUAGGA--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.