Results 61 - 80 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23249 | 5' | -61.5 | NC_005259.1 | + | 14879 | 0.68 | 0.341091 |
Target: 5'- uGCCCGaGCCGCCGCcguaUGGUCaaGCCa -3' miRNA: 3'- -UGGGC-CGGUGGUGugg-GCUAGgaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 20423 | 0.68 | 0.341091 |
Target: 5'- uACCCGGUCACCgACGCCacagugcuccaCGA-CgaGCCg -3' miRNA: 3'- -UGGGCCGGUGG-UGUGG-----------GCUaGgaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 45499 | 0.68 | 0.333405 |
Target: 5'- gGCCUuggucgcuguGGCCACCGCGCCgGuguuggCC-GCCg -3' miRNA: 3'- -UGGG----------CCGGUGGUGUGGgCua----GGaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 46821 | 0.68 | 0.332643 |
Target: 5'- -aCCGGCCACCugagugaGCGCCCcggcGAg-CUGCCc -3' miRNA: 3'- ugGGCCGGUGG-------UGUGGG----CUagGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 45315 | 0.69 | 0.325846 |
Target: 5'- cGCCgaGGCCGCCGCcgaacugcgugGCCUGcgCCgccuggGCCg -3' miRNA: 3'- -UGGg-CCGGUGGUG-----------UGGGCuaGGa-----CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 41247 | 0.69 | 0.325846 |
Target: 5'- gAUCCGGUgcgccuCACCGC-CCCGGUCgaGCa -3' miRNA: 3'- -UGGGCCG------GUGGUGuGGGCUAGgaCGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 63674 | 0.69 | 0.318415 |
Target: 5'- cACCuCGGgCACCgGCGCgCCGGggaucugcgCCUGCCc -3' miRNA: 3'- -UGG-GCCgGUGG-UGUG-GGCUa--------GGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 4358 | 0.69 | 0.311113 |
Target: 5'- aGCgCCGGaCGgCACGCCCGugcCCUGCUc -3' miRNA: 3'- -UG-GGCCgGUgGUGUGGGCua-GGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 67983 | 0.69 | 0.306792 |
Target: 5'- gGCgUGGCCACCGCcgcgagcgucgacuuGCCC--UCCUGCg -3' miRNA: 3'- -UGgGCCGGUGGUG---------------UGGGcuAGGACGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 38944 | 0.69 | 0.303938 |
Target: 5'- uGCCCGG-UGCCGCugCCGccgagagCCUGCa -3' miRNA: 3'- -UGGGCCgGUGGUGugGGCua-----GGACGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 61117 | 0.69 | 0.303938 |
Target: 5'- aGCCCGaGCCgagcacgguGCCGuuCUCGAUCCgUGCCg -3' miRNA: 3'- -UGGGC-CGG---------UGGUguGGGCUAGG-ACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 4409 | 0.69 | 0.296891 |
Target: 5'- aACUacgagGGCCGCCACcgcgcGCCCGAggUCgaGCCg -3' miRNA: 3'- -UGGg----CCGGUGGUG-----UGGGCU--AGgaCGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 46766 | 0.69 | 0.289972 |
Target: 5'- cACCUGcGCCgacaGCCGCGCCCG--CCggGCCg -3' miRNA: 3'- -UGGGC-CGG----UGGUGUGGGCuaGGa-CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 35828 | 0.7 | 0.28318 |
Target: 5'- cCCCGcauaGCCGCCAcCGCCCGcgagcacagGUCCgccGCCg -3' miRNA: 3'- uGGGC----CGGUGGU-GUGGGC---------UAGGa--CGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 5415 | 0.7 | 0.28318 |
Target: 5'- cGCgCUGGCCGCCACgucgaggucugcGCCCG---CUGCCg -3' miRNA: 3'- -UG-GGCCGGUGGUG------------UGGGCuagGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 61856 | 0.7 | 0.26356 |
Target: 5'- cACCuCGGCCACCGC-CUCG--CgUGCCg -3' miRNA: 3'- -UGG-GCCGGUGGUGuGGGCuaGgACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 26538 | 0.7 | 0.251103 |
Target: 5'- aGCuuGGCCACCACGaucucaCCGAggCUGUa -3' miRNA: 3'- -UGggCCGGUGGUGUg-----GGCUagGACGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 7190 | 0.7 | 0.251103 |
Target: 5'- uGCCCGGCCugCggACGCaCCGGg-CUGCg -3' miRNA: 3'- -UGGGCCGGugG--UGUG-GGCUagGACGg -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 34225 | 0.71 | 0.233332 |
Target: 5'- cCCCGGC----GCugCCGGUCUUGCCg -3' miRNA: 3'- uGGGCCGguggUGugGGCUAGGACGG- -5' |
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23249 | 5' | -61.5 | NC_005259.1 | + | 52934 | 0.71 | 0.233332 |
Target: 5'- gGCCUGGUCGCUcaACGCCCGuaagcaCCcGCCg -3' miRNA: 3'- -UGGGCCGGUGG--UGUGGGCua----GGaCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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