miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 24818 0.68 0.364099
Target:  5'- cCCCGGCaCGCCGUGCCCGcaccgaccaagcaGUCCgUGCg -3'
miRNA:   3'- uGGGCCG-GUGGUGUGGGC-------------UAGG-ACGg -5'
23249 5' -61.5 NC_005259.1 + 25180 0.67 0.415893
Target:  5'- gACCCGuaCGCCGC-CgCCGAUCCcaCCg -3'
miRNA:   3'- -UGGGCcgGUGGUGuG-GGCUAGGacGG- -5'
23249 5' -61.5 NC_005259.1 + 25914 0.71 0.227648
Target:  5'- cGCCUGaGCCGCCGC-CgCCGGUCCggugagcgcacGCCg -3'
miRNA:   3'- -UGGGC-CGGUGGUGuG-GGCUAGGa----------CGG- -5'
23249 5' -61.5 NC_005259.1 + 25954 0.66 0.452209
Target:  5'- uGCCCGGcCCGCCgACGCCugCGAUgagaCCgggcagcGCCg -3'
miRNA:   3'- -UGGGCC-GGUGG-UGUGG--GCUA----GGa------CGG- -5'
23249 5' -61.5 NC_005259.1 + 26107 0.68 0.364912
Target:  5'- cCCCGagcagaccGCCGCCGCcgguCgCCGGUCCgacGCCg -3'
miRNA:   3'- uGGGC--------CGGUGGUGu---G-GGCUAGGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 26538 0.7 0.251103
Target:  5'- aGCuuGGCCACCACGaucucaCCGAggCUGUa -3'
miRNA:   3'- -UGggCCGGUGGUGUg-----GGCUagGACGg -5'
23249 5' -61.5 NC_005259.1 + 28793 0.66 0.490189
Target:  5'- -gCCGGUCGCUACGCCaucgacaccaCGAUCCacGCg -3'
miRNA:   3'- ugGGCCGGUGGUGUGG----------GCUAGGa-CGg -5'
23249 5' -61.5 NC_005259.1 + 29933 0.74 0.133152
Target:  5'- cGCgUGGCCGCCACgcgGCCCGGUCgCgGCUg -3'
miRNA:   3'- -UGgGCCGGUGGUG---UGGGCUAG-GaCGG- -5'
23249 5' -61.5 NC_005259.1 + 30165 0.66 0.490189
Target:  5'- cGCCUacaGGCCGCCACAgCCG--CCcGCa -3'
miRNA:   3'- -UGGG---CCGGUGGUGUgGGCuaGGaCGg -5'
23249 5' -61.5 NC_005259.1 + 31001 0.68 0.372279
Target:  5'- cGCCguggGGCCGgaacuguCCACACgUGAUCgUGCCg -3'
miRNA:   3'- -UGGg---CCGGU-------GGUGUGgGCUAGgACGG- -5'
23249 5' -61.5 NC_005259.1 + 31294 0.73 0.181615
Target:  5'- uGCCCGGUCugCGCAa-CGAgCUUGCCg -3'
miRNA:   3'- -UGGGCCGGugGUGUggGCUaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 31551 0.66 0.432923
Target:  5'- cGCCUuguagGGUgccgcugCACCGCGCCUGAUCgUcGCCa -3'
miRNA:   3'- -UGGG-----CCG-------GUGGUGUGGGCUAGgA-CGG- -5'
23249 5' -61.5 NC_005259.1 + 32990 0.68 0.364912
Target:  5'- -gCCGaggguGCCGCCACGCCCGAUgUCgGCa -3'
miRNA:   3'- ugGGC-----CGGUGGUGUGGGCUA-GGaCGg -5'
23249 5' -61.5 NC_005259.1 + 33113 0.77 0.095313
Target:  5'- uGCCUGuagggccacgcggcaGCCGCCGCGCgUGAUCUUGCCg -3'
miRNA:   3'- -UGGGC---------------CGGUGGUGUGgGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 33233 0.66 0.471005
Target:  5'- -gCCGGUCACCGCguacguGCCaGAU-CUGCCc -3'
miRNA:   3'- ugGGCCGGUGGUG------UGGgCUAgGACGG- -5'
23249 5' -61.5 NC_005259.1 + 34225 0.71 0.233332
Target:  5'- cCCCGGC----GCugCCGGUCUUGCCg -3'
miRNA:   3'- uGGGCCGguggUGugGGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 35462 0.66 0.48055
Target:  5'- -aCCGGCacCGCCAgcacCGCCCGGUag-GCCg -3'
miRNA:   3'- ugGGCCG--GUGGU----GUGGGCUAggaCGG- -5'
23249 5' -61.5 NC_005259.1 + 35536 0.73 0.168203
Target:  5'- cGCCCGccGUCGCCGaucCGCCCGAUgaCUUGCCg -3'
miRNA:   3'- -UGGGC--CGGUGGU---GUGGGCUA--GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 35828 0.7 0.28318
Target:  5'- cCCCGcauaGCCGCCAcCGCCCGcgagcacagGUCCgccGCCg -3'
miRNA:   3'- uGGGC----CGGUGGU-GUGGGC---------UAGGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 36044 0.67 0.424805
Target:  5'- aGCgaGGCCACC-CGCgCGAgcaccaCCUGCUg -3'
miRNA:   3'- -UGggCCGGUGGuGUGgGCUa-----GGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.