miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 52934 0.71 0.233332
Target:  5'- gGCCUGGUCGCUcaACGCCCGuaagcaCCcGCCg -3'
miRNA:   3'- -UGGGCCGGUGG--UGUGGGCua----GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 53148 0.66 0.433831
Target:  5'- gACCaucaGCCGCUACGCcgaggCCGAUCUcGCCa -3'
miRNA:   3'- -UGGgc--CGGUGGUGUG-----GGCUAGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 53202 0.67 0.389857
Target:  5'- cCCCGGCgAUCAgauucgcguCGCCCGcgcCCUGCUu -3'
miRNA:   3'- uGGGCCGgUGGU---------GUGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 54538 0.66 0.48055
Target:  5'- uAUCCGGCCcaGCCACACagauUGAaCUUGCg -3'
miRNA:   3'- -UGGGCCGG--UGGUGUGg---GCUaGGACGg -5'
23249 5' -61.5 NC_005259.1 + 56110 0.67 0.398417
Target:  5'- cGCgUGGCCACCgaaacugugugcGCugCCGGUguaaaCCUGCg -3'
miRNA:   3'- -UGgGCCGGUGG------------UGugGGCUA-----GGACGg -5'
23249 5' -61.5 NC_005259.1 + 57677 0.66 0.433831
Target:  5'- gUCCGGCCaaucgaccgugGCCAggUugCCGggCUUGCCc -3'
miRNA:   3'- uGGGCCGG-----------UGGU--GugGGCuaGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 57961 0.66 0.490189
Target:  5'- gGCCCccauggucgaGGUCGCCGgGaucgugacCCCGGUCgaGCCa -3'
miRNA:   3'- -UGGG----------CCGGUGGUgU--------GGGCUAGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 58585 0.68 0.348117
Target:  5'- gGCgCGGCUGCCGgGCCgGAUCUUuucgagcGCCu -3'
miRNA:   3'- -UGgGCCGGUGGUgUGGgCUAGGA-------CGG- -5'
23249 5' -61.5 NC_005259.1 + 59689 0.67 0.415893
Target:  5'- -gCCGGaCCugCACACaCCGAgUCgUGUCc -3'
miRNA:   3'- ugGGCC-GGugGUGUG-GGCU-AGgACGG- -5'
23249 5' -61.5 NC_005259.1 + 60267 0.66 0.452209
Target:  5'- -gCUGGCCACCagcGCugCCGggCg-GCCa -3'
miRNA:   3'- ugGGCCGGUGG---UGugGGCuaGgaCGG- -5'
23249 5' -61.5 NC_005259.1 + 60432 0.73 0.181615
Target:  5'- gGCCCacggGGCgGCCACGCCCGAcaccucgauUCCgacGCUg -3'
miRNA:   3'- -UGGG----CCGgUGGUGUGGGCU---------AGGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 61117 0.69 0.303938
Target:  5'- aGCCCGaGCCgagcacgguGCCGuuCUCGAUCCgUGCCg -3'
miRNA:   3'- -UGGGC-CGG---------UGGUguGGGCUAGG-ACGG- -5'
23249 5' -61.5 NC_005259.1 + 61378 0.66 0.471005
Target:  5'- cACCUGcuGCCA-CACGCCCGAUgCcGUCg -3'
miRNA:   3'- -UGGGC--CGGUgGUGUGGGCUAgGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 61856 0.7 0.26356
Target:  5'- cACCuCGGCCACCGC-CUCG--CgUGCCg -3'
miRNA:   3'- -UGG-GCCGGUGGUGuGGGCuaGgACGG- -5'
23249 5' -61.5 NC_005259.1 + 63182 0.67 0.424805
Target:  5'- cGCCgaGGUgAUCGCACCCcGGUCgUGCg -3'
miRNA:   3'- -UGGg-CCGgUGGUGUGGG-CUAGgACGg -5'
23249 5' -61.5 NC_005259.1 + 63674 0.69 0.318415
Target:  5'- cACCuCGGgCACCgGCGCgCCGGggaucugcgCCUGCCc -3'
miRNA:   3'- -UGG-GCCgGUGG-UGUG-GGCUa--------GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 64748 0.67 0.415893
Target:  5'- cACCCGcCCACCGCGCCucgcgaCGGUgC-GCCu -3'
miRNA:   3'- -UGGGCcGGUGGUGUGG------GCUAgGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 65132 0.67 0.381419
Target:  5'- cGCaCCGGCgGCCACcCCCGAcaagUCgaaacggGCCa -3'
miRNA:   3'- -UG-GGCCGgUGGUGuGGGCUa---GGa------CGG- -5'
23249 5' -61.5 NC_005259.1 + 66635 0.74 0.144016
Target:  5'- cCCUGGCCACCGC-UCgGAUUgCUGCCg -3'
miRNA:   3'- uGGGCCGGUGGUGuGGgCUAG-GACGG- -5'
23249 5' -61.5 NC_005259.1 + 66755 0.74 0.136687
Target:  5'- uGCCCGGCCugC-CAgUCGAccgCCUGCUg -3'
miRNA:   3'- -UGGGCCGGugGuGUgGGCUa--GGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.