miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23249 5' -61.5 NC_005259.1 + 54538 0.66 0.48055
Target:  5'- uAUCCGGCCcaGCCACACagauUGAaCUUGCg -3'
miRNA:   3'- -UGGGCCGG--UGGUGUGg---GCUaGGACGg -5'
23249 5' -61.5 NC_005259.1 + 53202 0.67 0.389857
Target:  5'- cCCCGGCgAUCAgauucgcguCGCCCGcgcCCUGCUu -3'
miRNA:   3'- uGGGCCGgUGGU---------GUGGGCua-GGACGG- -5'
23249 5' -61.5 NC_005259.1 + 53148 0.66 0.433831
Target:  5'- gACCaucaGCCGCUACGCcgaggCCGAUCUcGCCa -3'
miRNA:   3'- -UGGgc--CGGUGGUGUG-----GGCUAGGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 52934 0.71 0.233332
Target:  5'- gGCCUGGUCGCUcaACGCCCGuaagcaCCcGCCg -3'
miRNA:   3'- -UGGGCCGGUGG--UGUGGGCua----GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 48149 0.79 0.059485
Target:  5'- cCCCGGCCACCACcucGCCCGAaaccgCCcccGCCg -3'
miRNA:   3'- uGGGCCGGUGGUG---UGGGCUa----GGa--CGG- -5'
23249 5' -61.5 NC_005259.1 + 47958 0.68 0.373103
Target:  5'- uGCCgaUGGCCGCCGCGCCgcccgCGAauaUGCCg -3'
miRNA:   3'- -UGG--GCCGGUGGUGUGG-----GCUaggACGG- -5'
23249 5' -61.5 NC_005259.1 + 46821 0.68 0.332643
Target:  5'- -aCCGGCCACCugagugaGCGCCCcggcGAg-CUGCCc -3'
miRNA:   3'- ugGGCCGGUGG-------UGUGGG----CUagGACGG- -5'
23249 5' -61.5 NC_005259.1 + 46766 0.69 0.289972
Target:  5'- cACCUGcGCCgacaGCCGCGCCCG--CCggGCCg -3'
miRNA:   3'- -UGGGC-CGG----UGGUGUGGGCuaGGa-CGG- -5'
23249 5' -61.5 NC_005259.1 + 46237 0.67 0.390708
Target:  5'- aGCUCGGCUGCCGCcugaggcacgucgacCCCGAgggUCUGCg -3'
miRNA:   3'- -UGGGCCGGUGGUGu--------------GGGCUa--GGACGg -5'
23249 5' -61.5 NC_005259.1 + 45499 0.68 0.333405
Target:  5'- gGCCUuggucgcuguGGCCACCGCGCCgGuguuggCC-GCCg -3'
miRNA:   3'- -UGGG----------CCGGUGGUGUGGgCua----GGaCGG- -5'
23249 5' -61.5 NC_005259.1 + 45315 0.69 0.325846
Target:  5'- cGCCgaGGCCGCCGCcgaacugcgugGCCUGcgCCgccuggGCCg -3'
miRNA:   3'- -UGGg-CCGGUGGUG-----------UGGGCuaGGa-----CGG- -5'
23249 5' -61.5 NC_005259.1 + 44512 0.72 0.206074
Target:  5'- uGCCCuGGCCACCcacgccgcCGCCCGGcagUCCacucaUGCCg -3'
miRNA:   3'- -UGGG-CCGGUGGu-------GUGGGCU---AGG-----ACGG- -5'
23249 5' -61.5 NC_005259.1 + 42480 0.67 0.398417
Target:  5'- gGCCCGGCCcguagaGCCGUgACCCG-UCCggcggugugGCCa -3'
miRNA:   3'- -UGGGCCGG------UGGUG-UGGGCuAGGa--------CGG- -5'
23249 5' -61.5 NC_005259.1 + 41929 0.66 0.471005
Target:  5'- gACCCGGUagaACguCGCuuGGUUgugCUGCCg -3'
miRNA:   3'- -UGGGCCGg--UGguGUGggCUAG---GACGG- -5'
23249 5' -61.5 NC_005259.1 + 41247 0.69 0.325846
Target:  5'- gAUCCGGUgcgccuCACCGC-CCCGGUCgaGCa -3'
miRNA:   3'- -UGGGCCG------GUGGUGuGGGCUAGgaCGg -5'
23249 5' -61.5 NC_005259.1 + 39903 0.67 0.398417
Target:  5'- -gCC-GCCGCC-CGCCuCGAUCCgucgaggGCCg -3'
miRNA:   3'- ugGGcCGGUGGuGUGG-GCUAGGa------CGG- -5'
23249 5' -61.5 NC_005259.1 + 39010 0.72 0.185819
Target:  5'- aGCgCGGUgACCAgACCCGAgauccguUCCUGCg -3'
miRNA:   3'- -UGgGCCGgUGGUgUGGGCU-------AGGACGg -5'
23249 5' -61.5 NC_005259.1 + 38944 0.69 0.303938
Target:  5'- uGCCCGG-UGCCGCugCCGccgagagCCUGCa -3'
miRNA:   3'- -UGGGCCgGUGGUGugGGCua-----GGACGg -5'
23249 5' -61.5 NC_005259.1 + 38042 1.11 0.000266
Target:  5'- uACCCGGCCACCACACCCGAUCCUGCCg -3'
miRNA:   3'- -UGGGCCGGUGGUGUGGGCUAGGACGG- -5'
23249 5' -61.5 NC_005259.1 + 37829 0.66 0.442966
Target:  5'- gACCuCGG--GCCACACCUGcGUCgaGCCg -3'
miRNA:   3'- -UGG-GCCggUGGUGUGGGC-UAGgaCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.